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Biology subjects

Cheong, Y.

Publications and source records attributed to Cheong, Y..

3 recordsLinked to original sources

Head-related transfer function predictions reveal dominant sound transmission mechanisms in a dolphin head

Toothed whales possess specialized anatomical structures in the head, including thin, excavated lower mandible embedded in mandibular fat bodies, complex skull morphology fused with the upper jaw, and extensive air spaces surrounding the middle ears and beneath the skull. In this study, we use finite element modeling to investigate how these structures influence the transmission of water-borne sounds to the ears. The models are based on volumetric representations derived from computed tomography (CT) scans of a live bottlenose dolphin (Tursiops truncatus). We iteratively modify the anatomical structures included in the model and use the predicted head-related transfer functions (HRTFs) as a proxy for comparison. Our results show that the mandibular fat bodies, which support a lower sound speed than the surrounding tissues, significantly enhance the forward receiving directionality at echolocation frequencies through refraction, in a manner similar to the melon in shaping the dolphins highly directional transmission beams. Additionally, we show that, in the frequencies encompassing dolphin communication signals, the air volumes help block the otherwise complex sound transmission through the bones. These findings highlight convergent evolutionary solutions in toothed whale anatomy to create strong directionality in both sound emission and reception governed by the same physical principles.

biophysics↗

PAEP and cilia gene splicing changes in endometrial glands during the implantation window in women with recurrent pregnancy loss

Endometrial glands are essential for fertility, consisting of ciliated and secretory cells that facilitate a suitable uterine environment for embryo implantation. This study sought to determine whether an endometrial gland specific transcriptome and splicing profile are altered in women with recurrent pregnancy loss. Our data provide a comprehensive catalogue of cilia and PAEP gene isoforms and relative exon usage in endometrial glands. We report a previously unannotated endometrial gland cilia transcript GALNT11 and its susceptibility to exon skipping. Key endometrial receptivity gene transcripts are also reported to change in endometrial glands of women with recurrent pregnancy loss. The endometrial gland cilia and PAEP targets identified in this study could be used to identify a perturbed endometrium, isolate causes of recurrent pregnancy loss and develop targeted therapies in personalised medicine.

developmental biology↗

Short-term diet intervention alters the small non-coding RNA (sncRNA) landscape of human sperm

Offspring health outcomes are often linked with epigenetic alterations triggered by maternal nutrition and intrauterine environment. Strong experimental data also link paternal preconception nutrition with pathophysiology in the offspring, but the mechanism(s) routing the effects of paternal exposures remain elusive. Animal experimental models have highlighted small non-coding RNAs (sncRNAs) as potential regulators of paternal effects, though less is known about the existence of similar mechanisms in human sperm. Here, we first characterised the baseline sncRNA landscape of human sperm, and then studied the effects of a 6-week diet intervention on their expression profile. Baseline profiling identified 5tRFs, miRNAs and piRNAs to be the most abundant sncRNA subtypes, primarily expressed from regulatory elements like UTRs, CpG-rich regions and promoters. Expression of a subset of these sncRNAs varied with age, BMI and sperm quality of the donor. Diet intervention enriched in vitamin D and omega-3 fatty acids showed a marked increase of these nutrients in circulation and altered the sperm sncRNA expression. These included 3 tRFs, 15 miRNAs and 112 piRNAs, with gene targets involved in fatty acid metabolism, vitamin D response (LXR/RXR activation, TGF-beta and Wnt signaling), and transposable elements. These findings provide evidence that human sperms are sensitive to alterations in exposures such as diet, and sncRNAs capture the epigenetic imprint of this change. Hence changes to paternal nutrition during preconception may improve sperm quality and offspring health outcomes. To benefit future research, we developed iDad_DB, an open access database of baseline and diet-altered sncRNA in human male germline.

bioinformatics↗