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Chen, Y.-I.

Publications and source records attributed to Chen, Y.-I..

2 recordsLinked to original sources

Bi-directional Modeling Between Cross-Scale Neural Activity

Fundamental principles underlying computation in multi-scale brain networks illustrate how multiple brain areas and their coordinated activity give rise to complex cognitive functions. Whereas the population brain activity has been studied in the micro-to meso-scale in building the connections between the dynamical patterns and the behaviors, such studies were often done at a single length scale and lacked an explanatory theory that identifies the neuronal origin across multiple scales. Here we introduce the NeuroBondGraph Network, a dynamical system incorporating both biological-inspired components and deep learning techniques to capture cross-scale dynamics that can infer and map the neural data from multiple scales. We demonstrated our model is not only 3.5 times more accurate than the popular sphere head model but also able to predict synchronous neural activity and extract correlated low-dimensional latent dynamics. We also showed that we can extend our methods to robustly predict held-out data across several weeks. The extracted effective connectivity agreed with the neuroanatomical hierarchy of motor control. Accordingly, the NeuroBondGraph Network opens the door to revealing comprehensive understanding of the brain computation, where network mechanisms of multi-scale communications are critical.

neuroscience

Deep learning enables rapid and robust analysis of fluorescence lifetime imaging in photon-starved conditions

Fluorescence lifetime imaging microscopy (FLIM) is a powerful tool to quantify molecular compositions and study the molecular states in the complex cellular environment as the lifetime readings are not biased by the fluorophore concentration or the excitation power. However, the current methods to generate FLIM images are either computationally intensive or unreliable when the number of photons acquired at each pixel is low. Here we introduce a new deep learning-based method termed flimGANE (fluorescence lifetime imaging based on Generative Adversarial Network Estimation) that can rapidly generate accurate and high-quality FLIM images even in the photon-starved conditions. We demonstrated our model is not only 258 times faster than the most popular time-domain least-square estimation (TD_LSE) method but also provide more accurate analysis in barcode identification, cellular structure visualization, Forster resonance energy transfer characterization, and metabolic state analysis. With its advantages in speed and reliability, flimGANE is particularly useful in fundamental biological research and clinical applications, where ultrafast analysis is critical.

cell biology