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Biology subjects

Chaumeil, P.

Publications and source records attributed to Chaumeil, P..

2 recordsLinked to original sources

Urbanization drives dietary specialization in insectivorous bird communities: insights from a multi-prey cafeteria experiment monitored by innovative cameras

1. Urbanization is widely associated with functional homogenization of ecological communities, including declines in insectivorous bird species and concomitant restructuring of arthropod assemblages. While these changes are often assumed to alter ecosystem functioning through trophic interactions, it remains unclear whether bird insectivory in cities can be inferred from community composition alone, or whether it also depends on which species actively forage, on natural prey availability and on the arthropod guilds exploited. 2. We hypothesized that urbanization (i) restructures both insectivorous bird communities and arthropod prey assemblages, thereby (ii) increasing divergence between trait-based potential and realized insectivory, while (iii) prey use is shaped by natural prey availability and active prey selection. 3. We used 25 plots distributed along a controlled urbanization gradient in Montreal, Canada. We combined acoustic monitoring of insectivorous bird communities, arthropod surveys, and camera-monitored cafeteria-like experiments deployed on 73 trees to quantify trait-based potential insectivory, realized insectivory through direct foraging interactions, natural prey availability and prey selection among three arthropod guilds (lepidopteran larvae, spiders and ants). 4. Urbanization reduced bird functional diversity while also decreasing the availability of high-quality prey, particularly lepidopteran larvae and spiders. Realized insectivory was consistently decoupled from community-based expectations, with actively foraging assemblages systematically less insect-specialized than predicted by broader community compositions (potential insectivory). This mismatch was non-random and only weakly related to urban and vegetation gradients. Prey use was largely independent of natural prey availability and instead reflected consistent preferences for larval prey over other guilds, with some indication that the functional composition of bird foraging assemblages further shaped which prey were exploited. 5. Our results show that realized trophic interactions emerge through successive ecological filters rather than directly from community composition: environmental conditions restructure bird communities and prey availability, subsequent foraging filters determine which species actively participate, and prey selection governs which guilds are consumed. Predicting ecosystem functioning in cities therefore requires considering not only biodiversity patterns but also the ecological processes linking community composition to realized trophic interactions.

ecology↗

Maggot: An ecosystem for sharing metadata within the web of FAIR Data

BackgroundDescriptive metadata are crucial for the discovery, reporting and mobilisation of research datasets. Addressing all metadata issues within the Data Management Plan often poses challenges for data producers. Organising and documenting data within data storage entails creating various descriptive metadata. Subsequently, data sharing involves ensuring metadata interoperability in alignment with FAIR principles. Given the tangible nature of these challenges, a real need for management tools has to be addressed to assist data managers to the fullest extent. Moreover, these tools have to meet data producers requirements and be user-friendly as well with minimal training as prerequisites. ResultsWe developed Maggot which stands for Metadata Aggregation on Data Storage, specifically designed to annotate datasets by generating metadata files to be linked into storage spaces. Maggot enables users to seamlessly generate and attach comprehensible metadata to datasets within a collaborative environment. This approach seamlessly integrates into a data management plan, effectively tackling challenges related to data organisation, documentation, storage, and frictionless FAIR metadata sharing within the collaborative group and beyond. Furthermore, for enabling metadata crosswalk, metadata generated with Maggot can be converted for a specific data repository or configured to be exported into a suitable format for data harvesting by third-party applications. ConclusionThe primary feature of Maggot is to ease metadata capture based on a carefully selected schema and standards. Then, it greatly eases access to data through metadata as requested nowadays in projects funded by public institutions and entities such as Europe Commission. Thus, Maggot can be used on one hand to promote good local versus global data management with open data sharing in mind while respecting FAIR principles, and on the other hand to prepare the future EOSC FAIR Web of Data within the framework of the European Open Science Cloud.

bioinformatics↗