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Biology subjects

Chandrasekharan, A.

Publications and source records attributed to Chandrasekharan, A..

4 recordsLinked to original sources

Automated detection of blink reflexes evoked by optogenetic stimulation of TRPV1-expressing corneal nociceptors in transgenic mice

BackgroundConventional rodent models for the study of corneal pain commonly evoke eye blink reflex using methods that indiscriminately activate polymodal nociceptors, mechanoreceptors, and thermoreceptors at temporal resolutions that dont closely match the sub-second timescale of underlying neural dynamics. New methodWe introduce a novel automated behavioral paradigm for detecting blink reflexes in transgenic TRPV1-ChR2-EYFP mice, enabled by cell-type-specific, millisecond-precision optogenetic stimulation of corneal nociceptors (490 nm light). Using multi-feature quantification, we achieve robust automated detection using univariate and multivariate classifiers. ResultsTRPV1-ChR2-EYFP mice exhibited blink reflexes to high-intensity blue light (490 nm, 10 ms pulses) in a threshold-dependent manner (N=3). Blink probability was 77.1 {+/-} 17.1% at high intensity (2.77 mW/mm2) versus 4.2 {+/-} 4.2% at low intensity (0.46 mW/mm2). Red light (638 nm) produced no intensity-dependent change. Noxious air puff evoked blinks in >95% of trials under all conditions. DeepLabCut-based pose estimation extracted six features quantifying the blink reflex, enabling automated detection with [≥]98% accuracy using univariate and multivariate classifiers. Comparison with existing methodsUnlike conventional air puff paradigms, this optogenetic approach enables precise, cell-type-specific stimulation of corneal nociceptors, supporting automated analysis of blink responses at sub-second resolution. ConclusionsThis video tracking behavioral method using machine learning algorithms that accurately classify blink versus no-blink enables high-throughput and observer-independent empirical assessment of blink reflex, suggestive of corneal pain. Moreover, inducing blink reflex in TRPV1-ChR2 mice using high-intensity blue light also demonstrates nociceptive-specific behavioral responses analogous to somatosensory optogenetically-evoked hindpaw pain in the same animal genotype.

neuroscience↗

Yoda molecules agonize PIEZO2

PIEZO proteins (PIEZO1 and PIEZO2) are essential mechanosensitive channels. PIEZO1 is thought to be selectively activated by Yoda molecules (Yoda1 and Yoda2). Although a structural framework for PIEZO1 activation by Yoda1 exists, a molecular mechanism underlying this selective activation is lacking. Here, using electrophysiology and calcium imaging, we show that Yoda1 increases PIEZO2 open probability and stretch sensitivity as efficaciously as PIEZO1 but elicits weaker PIEZO2-dependent calcium entry, rationalizing why its effect on PIEZO2 has been overlooked. Both Yoda1 and its more potent Yoda2 analog slow down inactivation of PIEZO2 currents with potency similar to PIEZO1 but with lower efficacy. Using mutagenesis and molecular dynamics simulations, we further show that Yoda2s benzoic acid group forms a transient salt bridge with a conserved arginine in the Yoda binding site, providing a molecular basis for Yoda2s increased potency. Our study cautions a reevaluation of studies using these molecules to untangle biological functions mediated by PIEZO channels.

biophysics↗

A Rapid Bead-Based Assay For Screening Of SARS-CoV-2 Neutralising Antibodies

Quantitative determination of neutralizing antibodies against Severe Acute Respiratory Syndrome Corona Virus-2 (SARS-CoV-2) is paramount in immunodiagnostics, vaccine efficacy testing, and immune response profiling among the vaccinated population. Cost-effective, rapid, easy-to-perform assays are essential to support the vaccine development process and immunosurveillance studies. Here, we describe a bead-based screening assay for S1-neutralization using recombinant fluorescent proteins of hACE2 and SARS-CoV2-S1, immobilized on solid beads employing nanobodies /metal-affinity tags. Nanobody-mediated capture of SARS-CoV-2 - Spike (S1) on agarose beads served as the trap for soluble recombinant ACE2-GFPSpark, inhibited by neutralizing antibody. The first approach demonstrates single-color fluorescent imaging of ACE2-GFPspark binding to His-tagged S1-Receptor Binding Domain (RBD-His) immobilized beads. The second approach is dual-color imaging of soluble ACE2-GFPSpark to S1-Orange Fluorescent Protein (S1-OFPSpark) beads. Both methods showed a good correlation with the gold standard pseudovirion assay and can be adapted to any fluorescent platforms for screening. Life-time imaging of the ACE2-GFPSpark confirmed the interaction of ACE2 and S1-OFPSpark on beads. The self-renewable source of secreted recombinant proteins from stable cells and its direct use without necessitating purification renders the platform a cost-effective and rapid one than the popular pseudovirion assay and live virus-based assays. Any laboratory with minimum expertise can rapidly perform this bead assay for neutralizing antibody detection using stable engineered cells.

molecular biology↗

Endosomes facilitate mitochondrial clearance by enhancing Mfn2 degradation and subsequent Parkin recruitment

Mutations in ubiquitin ligase Parkin are associated with Parkinsons disease and defective mitophagy. Conceptually, Parkin-dependent mitophagy is classified into two phases; 1. Parkin recruits to and ubiquitinates mitochondrial proteins, 2. Formation of autophagosome membrane, sequestering mitochondria for degradation. Recently, endosomal machineries were reported to contribute to the later stage for membrane assembly. We report a role for endosomes in the events upstream of phase 1. We demonstrate that an endosomal ubiquitin ligase CARP2 associates with damaged mitochondria, and this association precedes that of Parkin. CARP2 interacts with Parkin, and stable recruitment of Parkin to damaged mitochondria was substantially reduced in CARP2 KO cells. Our study unravels a novel role of endosomes in modulating upstream pathways of Parkin-dependent mitophagy initiation.

cell biology↗