Biology subjects

Chabot, D.

Publications and source records attributed to Chabot, D..

5 recordsLinked to original sources

bioRxiv2025

Past environments modulate response to fluctuating temperatures in a marine fish species

The rise in ocean temperatures predicted due to the global warming will impact the survival and structure of various marine organisms, in particular ectothermic organisms. Phenotypic plasticity enables species to cope with environmental changes, providing a vital buffer for evolutionary changes. Yet, the dynamics and the molecular mechanisms underpinning these plastic responses remain largely unexplored. Here, we assessed the impact of acclimation environment on organisms capacity for thermal plasticity. We conducted a genome-wide transcriptomic analysis on the Acadian redfish, S. fasciatus, exposed to four temperatures (2.5, 5.0, 7.5 and 10.0 ) over a long-term period (up to 10 months) followed by an acute temperature change (24 hours), simulating natural fluctuation condition the species could encounter. Our results showed a dynamic transcriptional response to temperature involving various genes functions. The rapid response to temperature shifts, coupled with the sustained expression of specific genes over an extended period highlighted the species capacity for plastic response to temperature changes. We also detected a significant effect of the interaction between the long and short terms temperature exposure on gene expression, highlighting the influence of the past environment on response to acute temperature changes. Specifically, fish acclimated to higher temperatures demonstrated an increased stress-related response to environmental fluctuations, as evidenced by both the shape of their reaction norms and the implication of stress-related gene functions. This result suggests that temperature conditions predicted for the near future in the Northwest Atlantic will trigger less adaptive plasticity to environmental fluctuations, highlighting the species vulnerability to ocean warming.

ecology↗

bioRxiv2025

Warming, but not acidification, increases metabolism and reduces growth of redfish (Sebastes fasciatus) in the Gulf of St. Lawrence.

Understanding the effects of global change, including temperature, pH, and oxygen availability, on commercially important species is crucial for anticipating consequences for these resources and their ecosystems. In the Gulf of St. Lawrence (GSL), redfish (Sebastes spp.) have been under moratorium from 1995 to 2024, with a massive recruitment observed in 2011-2013. However, little is known about their metabolic and thermal physiology, making predictions of their response to changing GSL conditions challenging. To address this, we quantified the effects of four acclimatation temperatures (2.5, 5.0, 7.5, and 10.0 ) and two pH levels (7.35 and 7.75) on standard and maximum metabolic rates (SMR and MMR), aerobic scope (AS), hypoxia tolerance (O2crit), food consumption, and growth in redfish. SMR, MMR, and AS increased with temperature, but growth decreased at the highest temperature, likely due to increased metabolic demand, with food consumption similar across 5.0 to 10.0 {degrees}C treatments. O2crit was lower for fish acclimated to 2.5 and 5.0 , making redfish less hypoxia-tolerant at higher temperatures. Except from SMR, no significant effect of pH was observed. These results suggest that future changes in the GSL will challenge redfish, with potential long-term effects on their growth due to increased energy requirements.

physiology↗

bioRxiv2024

Behavioral screening defines three molecular Parkinsonism subgroups in Drosophila

Parkinsonism is defined by motor dysfunction, but the specific upstream molecular causes of these clinical symptoms can vary widely. We hypothesize that these causes converge onto a limited number of core cellular pathways. To investigate this, we created a new collection of 24 genetically very well-controlled animal models of familial forms of parkinsonism. Using unbiased behavioral screening and machine learning we identified three clusters of mutants that converge on (1) mitochondrial function; (2) retromer/vesicle trafficking; and (3) proteostasis/autophagy. Genes within each cluster have a similar genetic interaction profile and compounds that target specific molecular pathways ameliorate dopaminergic neuron dysfunction in a cluster-specific manner. This suggests that familial parkinsonism can be stratified into three broad functional groups and our findings pave the way for targeted biomarker discovery and drug development.

neuroscience↗

bioRxiv2022

Parkinson mutations in DNAJC6 cause lipid defects and neurodegeneration that are rescued by Synj1

Recent evidence links dysfunctional lipid metabolism to the pathogenesis of Parkinsons disease, but the mechanisms are not resolved. Here, we created a new Drosophila knock-in model of DNAJC6/Auxilin and find that the pathogenic mutation causes synaptic dysfunction, neurological defects and neurodegeneration, as well as specific lipid metabolism alterations. In these mutants membrane lipids containing long-chain polyunsaturated fatty acids, including phosphatidylinositol lipid species that are key for synaptic vesicle recycling and organelle function are reduced. Overexpression of another protein mutated in Parkinsons disease, Synaptojanin-1, known to bind and synthesize specific phosphoinositides, strongly rescues the DNAJC6/Auxilin neuronal defects and neurodegeneration. Our work reveals a functional relation between two proteins mutated in Parkinsons disease and implicates deregulated phosphoinositide metabolism in the maintenance of neuronal integrity and neuronal survival in Parkinsonism.

cell biology↗

bioRxiv2020

The Arabidopsis gene RGO mediates cytokinin responses and increases seed yield

A novel gene, At1g77960, from Arabidopsis thaliana was characterized. At1g77960 transcripts accumulate to very high levels in plants ectopically overexpressing the Golden2-like1 (GLK1) transcription factor and is designated as a Response to GLK1 Overexpression (RGO) gene. RGO encodes a protein with domains of tandem QH and QN repeats. Transcripts and promoter GUS reporter analyses indicated that RGO is expressed in roots, leaves, stems, floral and siliques tissues but not in seeds. Expression of the RGO:YFP fusion protein demonstrated that RGO is localized to the endoplasmic reticulum. MicroRNA mediated silencing of RGO resulted in severe reductions in vegetative and root growth, delayed flowering and reduced seed yield and viability, suggesting that RGO is essential for plant development. Conversely, ectopic overexpression of RGO resulted in enhanced vegetative growth including increased axillary bud formation and a 20% higher seed yield. Stable overexpression of RGO in Brassica napus also produced a similar increase in seed yield. Cytokinin (CK) response assays including root growth, green calli formation from excised hypocotyls and chlorophyll retention during dark-induced senescence suggest that one role of RGO is to mediate CK responses in plant development. These results suggest that RGO could be a target gene for increasing crop seed yields. One-sentence summaryRGO, a novel gene from Arabidopsis, is essential for plant development, mediates CK signaling and increases seed yield in Arabidopsis and rapeseed when overexpressed.

plant biology↗