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Cerda-Jara, C. A.

Publications and source records attributed to Cerda-Jara, C. A..

3 recordsLinked to original sources

Tau spreading coordinates intercellular lipid flux enhancing neuronal resilience to lipid toxicity

The presence of intrinsically disordered proteins (IDPs) in the extracellular environment of the brain suggests that protein disorder may serve functions beyond those confined to the intracellular space. Tau, a prototypical IDP linked to tauopathies, a class of neurodegenerative diseases, is continuously released and spreads between cells in the brain, yet the biological significance of this extracellular phase remains unresolved. Here, we show that spreading tau coordinates neutral lipid homeostasis by promoting neuronal lipid efflux and enhancing resilience to lipid toxicity. Integrating transcriptomics and lipidomics, we demonstrate that tau spreading reprograms lipid transport pathways and triggers redistribution of triacylglycerol pools, remodeling neutral lipid metabolism. Mechanistically, cellular uptake of spreading tau drives its accumulation within neutral lipid-rich compartments and promotes neuronal lipid efflux. The exported lipids are enriched in peroxidized species that are subsequently transferred to astrocytes, reducing neuronal lipid stress and revealing a pathway through which tau regulates lipid homeostasis. Our findings reframe spreading tau as a regulator of intercellular lipid flux and position protein disorder as an active mediator of cell-to-cell communication in coordinating tissue metabolism. Loss of this homeostatic function is likely to contribute to the early metabolic dysfunction associated with tauopathy.

neuroscience↗

pyTrance finds co-localizing RNAs in subcellular spatial transcriptomics data

Regulation of RNA subcellular localization is crucial for cellular functions in health and disease. For example, local translation of co-localized RNAs is crucial for neural biology. However, it is challenging to identify RNA co-localization events. Here, we present pyTrance, a computational framework that predicts and quantifies subcellular RNA co-localization from spatial transcriptomics data, leveraging latent embeddings learned by a graph neural network. Based on extensive benchmarking, detection of co-localizing RNAs was more accurate and robust compared to existing methods. In mouse brain tissue, pyTrance found several RNA co-localization patterns. Co-localized RNAs were often functionally related and validated by biological knowledge. Interestingly, among novel patterns, pyTrance identified co-localization of GABAergic markers, including Gad1, in neuronal projections. Experimental validation led to the discovery of a spatial overlap between Gad1 mRNA/protein, strongly suggesting local translation. Our results establish pyTrance as a state-of-the-art method to discover biologically important RNA co-localization at subcellular resolution.

bioinformatics↗

miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner

The circular RNA (circRNA) Cdr1as is conserved across mammals and highly expressed in neurons, where it directly interacts with microRNA miR-7. However, the biological function of this interaction is unknown. Here, using primary forebrain murine neurons, we demonstrate that stimulating neurons by sustained depolarization rapidly induced two-fold transcriptional up-regulation of Cdr1as and strong post-transcriptional stabilization of miR-7. Cdr1as loss caused doubling of glutamate release from stimulated synapses and increased frequency and duration of local neuronal bursts. Moreover, periodicity of neuronal networks was increased and synchronicity was impaired. Strikingly, these effects were reverted by sustained expression of miR-7 which also cleared Cdr1as molecules from neuronal projections. Consistently, without Cdr1as, transcriptomic changes caused by miR-7 overexpression were stronger (including miR-7-targets down-regulation) and enriched in secretion/synaptic plasticity pathways. Altogether, our results suggest that in forebrain neurons Cdr1as buffers miR-7 activity to control glutamatergic excitatory transmission and neuronal connectivity important for long-lasting synaptic adaptations.

molecular biology↗