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Biology subjects

Ceraolo, C.

Publications and source records attributed to Ceraolo, C..

3 recordsLinked to original sources

Exclusion from DNA double-strand breaks is a pervasive feature of the hnRNP family

Heterogeneous nuclear ribonucleoproteins (hnRNPs) are abundant RNA-binding proteins that have been linked individually to the DNA double-strand break (DSB) response, but their behaviour at damaged chromatin has only been examined one protein at a time and under disparate conditions. Here, we compare the core hnRNP family side by side by laser microirradiation and live-cell imaging. We find that 13 of 14 members are excluded from damaged chromatin, 10 directly and 3 after a transient phase of recruitment, establishing exclusion rather than accumulation as the predominant behaviour of this family. We characterised this behaviour in detail for hnRNPH1, which has not previously been linked directly to the DSB response. Its exclusion is sustained for several hours and also occurs at nuclease-induced breaks at a defined genomic locus. Importantly, exclusion is independent of the signalling pathways that drive protein recruitment to breaks and of transcriptional elongation, and instead requires the GYR low-complexity domain, with RNA binding contributing redundantly through three quasi-RNA recognition motifs. Finally, tethering hnRNPH1 to breaks through the RNF8 FHA domain selectively impairs 53BP1 accumulation without affecting {gamma}-H2AX, MDC1 or RPA, and hnRNPH1 is excluded from 53BP1 nuclear bodies in unchallenged cells. Together, these findings establish protein exclusion as an active component of the DSB response and show that the presence of an hnRNP at damaged chromatin can determine which repair factors assemble at DNA break sites.

cell biology↗

Master Regulator Analysis of the SARS-CoV-2/Human interactome

the recent epidemic outbreak of a novel human coronavirus called SARS-CoV-2 and causing the respiratory tract disease COVID-19 has reached worldwide resonance and a global effort is being undertaken to characterize the molecular features and evolutionary origins of this virus. In this paper, we set out to shed light on the SARS-CoV-2/host receptor recognition, a crucial factor for successful virus infection. Based on the current knowledge of the interactome between SARS-CoV-2 and host cell proteins, we performed Master Regulator Analysis to detect which parts of the human interactome are most affected by the infection. We detected, amongst others, affected apoptotic and mitochondrial mechanisms, and a downregulation of the ACE2 protein receptor, notions that can be used to develop specific therapies against this new virus.

bioinformatics↗

Phylogenomic analysis of the 2019-nCoV coronavirus

There is rising global concern for the recently emerged novel Coronavirus (2019-nCov). Full genomic sequences have been released by the worldwide scientific community in the last few weeks in order to understand the evolutionary origin and molecular characteristics of this virus. Taking advantage of all the genomic information currently available, we constructed a phylogenetic tree including also representatives of other coronaviridae, such as Bat coronavirus (BCoV) and SARS. We confirm high sequence similarity (>99%) between all sequenced 2019-nCoVs genomes available, with the closest BCoV sequence sharing 96.2% sequence identity, confirming the notion of a zoonotic origin of 2019-nCoV. Despite the low heterogeneity of the 2019-nCoV genomes, we could identify at least two hyper-variable genomic hotspots, one of which is responsible for a Serine/Leucine variation in the viral ORF8-encoded protein. Finally, we perform a full proteomic comparison with other coronaviridae, identifying key aminoacidic differences to be considered for antiviral strategies deriving from previous anti-coronavirus approaches.

bioinformatics↗