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Carvalho, V. R.

Publications and source records attributed to Carvalho, V. R..

6 recordsLinked to original sources

An open-access EEG dataset for speech decoding: Exploring the role of articulation and coarticulation

Electroencephalography (EEG) holds promise for brain-computer interface (BCI) devices as a non-invasive measure of neural activity. With increased attention to EEG-based BCI systems, publicly available datasets that can represent the complex tasks required for naturalistic speech decoding are necessary to establish a common standard of performance within the BCI community. Effective solutions must overcome various kinds of noise in the EEG signal and remain reliable across sessions and subjects without overfitting to a specific dataset or task. We present two validated datasets (N=8 and N=16) for classification at the phoneme and word level and by the articulatory properties of phonemes. EEG signals were recorded from 64 channels while subjects listened to and repeated six consonants and five vowels. Individual phonemes were combined in different phonetic environments to produce coarticulated variation in forty consonant-vowel pairs, twenty real words, and twenty pseudowords. Phoneme pairs and words were presented during a control condition and during transcranial magnetic stimulation targeted to inhibit or augment the EEG signal associated with specific articulatory processes.

neuroscience↗

Exploratory methods for high-performance EEG speech decoding

State-of-the-art technologies in neural speech decoding utilize data collected from microwires or microarrays implanted directly into the cerebral cortex. Yet as a tool accessible only to individuals with implanted electrodes, speech decoding from devices of this nature is severely limited in its implementation, and cannot be considered a viable solution for widespread application. Speech decoding from non-invasive EEG signals can achieve relatively high accuracy (70-80%), but only from very small classification tasks, with more complex tasks typically yielding a limited (20-50%) classification accuracy. We propose a novel combination of technologies in which transcranial magnetic stimulation (TMS) is first applied to augment the neural signals of interest, producing a greater signal-to-noise ratio in the EEG data. Next, delay differential analysis (DDA) - a cutting-edge computational method based on nonlinear dynamics - is implemented to capture the widest range of information available in the neural signal, by incorporating both linear and nonlinear dynamics.

neuroscience↗

A fully adapted headstage for electrophysiological experiments with custom and scalable electrode arrays to record widely distributed brain regions

Electrophysiological recordings lead amongst the techniques that aim to investigate the dynamics of neural activity sampled from large neural ensembles. However, the financial costs associated with the state-of-the-art technology used to manufacture probes and multi-channel recording systems make these experiments virtually inaccessible to small laboratories, especially if located in developing countries. Here, we describe a new method for implanting several tungsten electrode arrays, widely distributed over the brain. Moreover, we designed a headstage system, using the Intan(R) RHD2000 chipset, associated with a connector (replacing the expensive commercial Omnetics connector), that allows the usage of disposable and cheap cranial implants. Our results showed high-quality multichannel recording in freely moving animals (detecting local field, evoked responses and unit activities) and robust mechanical connections ensuring long-term continuous recordings. Our project represents an open source and inexpensive alternative to develop customized extracellular records from multiple brain regions.

neuroscience↗

Active probing to highlight approaching transitions to ictal states in coupled neural mass models

The extraction of electrophysiological features that reliably forecast the occurrence of seizures is one of the most challenging goals in epilepsy research. Among possible approaches to tackle this problem is the use of active probing paradigms in which responses to stimuli are used to detect underlying system changes leading up to seizures. This work evaluates the theoretical and mechanistic underpinnings of this strategy using a well-studied seizure-generating neural mass model with two coupled populations. Different simulations are done by shifting parameters (excitability, slow inhibition, and coupling gains) towards ictal states while low-frequency probing stimuli are applied to either one or both populations. The correlation between the extracted features and the shifted parameter indicates if the impending transition to the ictal state may be identified in advance. Results show that not only can the response to the probing stimuli forecast seizures but this is true regardless of the altered ictogenic parameter. That is, similar feature changes are highlighted by probing stimuli responses in advance of the seizure including: increased response variance and lag-1 autocorrelation, decreased skewness, and increased mutual information between the outputs of both model subsets. These changes were restricted to the stimulated population, showing a local effect of this perturbational approach. The transition latencies from normal activity to sustained discharges of spikes were not affected, suggesting that stimuli had no pro-ictal effects. However, stimuli were found to elicit interictal-like spikes just before the transition to the ictal state. Furthermore, the observed feature changes highlighted by probing the neuronal populations may reflect the phenomenon of critical slowing down, where increased recovery times from perturbations may signal the loss of a systems resilience and are common hallmarks of an impending critical transition. These results provide more evidence that active probing approaches highlight information about underlying system changes involved in ictogenesis and may be able to play a role in assisting seizure forecasting methods which can be incorporated into early-warning systems that ultimately enable closing the loop for targeted seizure-controlling interventions. Author summaryEpilepsy is characterized by spontaneous and recurrent seizures. Developing a method to forecast the occurrence of these events would ease part of the burden to patients by providing warning systems and identifying critical periods for closed-loop seizure suppressing methods. However, this task is far from trivial and doing this in a clinical setting has been a challenge that is not yet solved. A possible way to achieve this is by using active probing paradigms, in which stimuli are used to highlight otherwise hidden changes in brain dynamics that may lead to seizures. In this work, this approach is tested in a computational model with two coupled neuronal populations. Active probing responses highlighted underlying model parameter changes that led neuronal activity closer to seizures, something that was not detected with the passive observation in most evaluated model settings. Observed feature changes revealed higher excitability, longer recovery times from stimuli, and increased synchrony between populations as the threshold to seizure-like activity approached. This indicates that low frequency stimuli may be used to reveal early-warning signs and assist in seizure forecasting methods.

neuroscience↗

A Custom Microcontrolled and Wireless-Operated Chamber for Auditory Fear Conditioning

Animal behavioral paradigms, such as classical conditioning and operant conditioning, are an important tool to study the neural basis of cognition and behavior. These paradigms involve manipulating sensory stimuli in a way that learning processes are induced under controlled experimental conditions. However, the majority of the commercially available equipment did not offer flexibility to manipulate stimuli. Therefore, the development of most versatile devices would allow the study of more complex cognitive functions. The purpose of this work is to present a low-cost, customized and wireless-operated chamber for animal behavior conditioning, based on the joint operation of two microcontroller modules: Arduino Due and ESP8266-12E. Our results showed that the auditory stimulation system allows setting the carrier frequency in the range of 1 Hz up to more than 100 kHz and the sound stimulus can be modulated in amplitude, also over a wide range of frequencies. Likewise, foot-shock could be precisely manipulated regarding its amplitude (from ~200 A to ~1500 A) and frequency (up to 20 pulses per second). Finally, adult rats exposed to a protocol of cued fear conditioning in our device showed consistent behavioral response and electrophysiological evoked responses in the midbrain auditory pathway. Furthermore, the device developed in the current study represents an open source alternative to develop customized protocols to study fear memory under conditions of varied sensory stimuli.

bioengineering↗

Evaluating three different adaptive decomposition methods for EEG signal seizure detection and classification

Signal processing and machine learning methods are valuable tools in epilepsy research, potentially assisting in diagnosis, seizure detection, prediction and real-time event detection during long term monitoring. Recent approaches involve the decomposition of these signals in different modes or functions in a data-dependent and adaptive way. These approaches may provide advantages over commonly used Fourier based methods due to their ability to work with nonlinear and non-stationary data. In this work, three adaptive decomposition methods (Empirical Mode Decomposition, Empirical Wavelet Transform and Variational Mode Decomposition) are evaluated for the classification of normal, ictal and inter-ictal EEG signals using a freely available database. We provide a previously unavailable common methodology for comparing the performance of these methods for EEG seizure detection, with the use of the same classifiers, parameters and spectral and time domain features. It is shown that the outcomes using the three methods are quite similar, with maximum accuracies of 97.5% for Empirical Mode Decomposition, 96.7% for Empirical Wavelet Transform and 98.2% for Variational Mode Decomposition. Features were also extracted from the original non-decomposed signals, yielding inferior, but still fairly accurate (95.3%) results. The evaluated decomposition methods are promising approaches for seizure detection, but their use should be judiciously analysed, especially in situations that require real-time processing and computational power is an issue. An additional methodological contribution of this work is the development of two python packages, already available at the PyPI repository: One for the Empirical Wavelet Transform (ewtpy) and another for Variational Mode Decomposition (vmdpy).

neuroscience↗