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Carrillo, J. D.

Publications and source records attributed to Carrillo, J. D..

2 recordsLinked to original sources

Splendid isolation with migration: Diversity dynamics of South American mammals

Biodiversity dynamics following encounters between long-isolated faunas provide natural experiments to examine how diversity dependence and ecological interactions shape diversification patterns at macroevolutionary time scales. The Cenozoic arrival of African and North American mammals in South America likely had transformative effects on one of the worlds most unique and previously isolated continental faunas. However, the extent and persistence of these effects remain debated. Here, we assess the impact of immigrant mammal groups on native South American mammal diversity by combining an extensive fossil dataset (6,214 occurrences; 1,739 species) with deep learning methods and time-series analyses to model dynamics of mammalian biodiversity throughout the Cenozoic. The arrival of African and North American lineages increased the continents overall species richness but also contributed to a decline in native diversity. Additionally, our models suggest that the negative effect of immigrant lineages on native diversity was strongest immediately after their arrival and initial diversification, but this effect lessened over time. Overall, these findings support a scenario where immigration simultaneously enriched South American faunas and triggered a time-decaying replacement of native lineages, reshaping continental biodiversity.

evolutionary biology↗

Challenges in estimating species age from phylogenetic trees

AimSpecies age, the elapsed time since origination, can give an insight into how species longevity might influence eco-evolutionary dynamics and has been hypothesized to influence extinction risk. Traditionally, species ages have been measured in the fossil record. However, recently, numerous studies have attempted to estimate the ages of extant species from the branch lengths of time-calibrated phylogenies. This approach poses problems because phylogenetic trees contain direct information about species identity only at the tips and not along the branches. Here, we show that incomplete taxon sampling, extinction, and different assumptions about speciation modes can significantly alter the relationship between true species age and phylogenetic branch lengths, leading to high error rates. We found that these biases can lead to erroneous interpretations of eco-evolutionary patterns derived from the comparison between phylogenetic age and other traits, such as extinction risk. InnovationFor bifurcating speciation, which is the default assumption in most analyses, we propose a probabilistic approach to improve the estimation of species ages, based on the properties of a birth-death process. We show that our model can reduce the error by one order of magnitude under cases of high extinction and high percentage of unsampled extant species. Main conclusionOur results call for caution in interpreting the relationship between phylogenetic ages and eco-evolutionary traits, as this can lead to biased and erroneous conclusions. We show that, under the assumption of bifurcate, it is possible to obtain better approximations of species age by combining information from branch lengths with the expectations of a birth-death process.

evolutionary biology↗