Biology subjects

Carnell, O.

Publications and source records attributed to Carnell, O..

3 recordsLinked to original sources

bioRxiv2025

Crimean-Congo Haemorrhagic Fever Virus Circulates within Broad Ecological Networks of Ticks and Vertebrates

We produced spatial datasets of the known distribution of Orthonairovirus haemorrhagiae (formerly Crimean-Congo haemorrhagic fever virus, CCHFV) by compiling human cases, virus isolations, and serological data from humans and animals, spanning from Europe to southern Africa, with the aim on virus range modelling. Models based solely on climatic variables produced unrealistic and overly extensive predictions, overestimating suitability in northern Europe and confirming that climate alone poorly explains CCHFV range. Approaches using only tick species distributions underperformed in many parts of Africa, reflecting the complexity of vector-host interactions and the absence of a strict tick-virus association. The integration of human-biting tick distributions, livestock density, and chorotypes yielded the most robust results, accurately capturing over 90% of known occurrences, by identifying vertebrate assemblages most likely to amplify the virus while reducing dimensionality. Chorotypes, representing clusters of co-occurring hosts, enhanced model performance and improved the delineation of both the northern and African ranges limits of the virus. Our results support a generalist epidemiological model in which multiple tick species, together with a broad range of vertebrate hosts, sustain CCHFV circulation. This ecological flexibility, rather than strict vector specificity, likely explains the CCHFV wide biogeographical range and occasional lineage expansions across continents. This study provides the most comprehensive assessment to date of the abiotic and biotic determinants of the distribution of CCHFV. Although gaps remain, this study demonstrates that coupling abiotic and biotic predictors provides a more accurate and ecologically meaningful understanding of CCHFV distribution. Author SummaryCrimean-Congo haemorrhagic fever virus (CCHFV) is a tick-borne pathogen causing severe disease in humans across Africa, Asia and Europe. Understanding where the virus may circulate is crucial for anticipating outbreaks and guiding surveillance. Previous studies have mostly relied on climate-based models, assuming that temperature and humidity determine where infected ticks can prevail. However, such models often overestimate risk, predicting virus presence in regions where no cases or vectors exist. In this study, we combined climatic data with ecological information on ticks, livestock, and wildlife to create a more realistic prediction of CCHFV distribution. By incorporating host-vector interactions and vertebrate communities, our models accurately captured most known occurrences and revealed the ecological patterns underlying virus transmission. Our results suggest that CCHFV persists within broad networks of tick and vertebrate species rather than a single vector. This integrated approach offers a powerful framework to identify emerging risk areas and forms a good starting point to further improve our understanding of the ecological drivers of tickborne viral diseases.

ecology↗

bioRxiv2021

Convalescence from prototype SARS-CoV-2 protects Syrian hamsters from disease caused by the Omicron variant

The mutation profile of the SARS-CoV-2 Omicron variant poses a concern for naturally acquired and vaccine-induced immunity. We investigated the ability of prior infection with an early SARS-CoV-2, 99.99% identical to Wuhan-Hu-1, to protect against disease caused by the Omicron variant. We established that infection with Omicron in naive Syrian hamsters resulted in a less severe disease than a comparable dose of prototype SARS-CoV-2 (Australia/VIC01/2020), with fewer clinical signs and less weight loss. We present data to show that these clinical observations were almost absent in convalescent hamsters challenged with the same dose of Omicron 50 days after an initial infection with Australia/VIC01/2020. The data provide evidence for immunity raised against prototype SARS-CoV-2 being protective against Omicron in the Syrian hamster model. Further investigation is required to conclusively determine whether Omicron is less pathogenic in Syrian hamsters and whether this is predictive of pathogenicity in humans.

microbiology↗

bioRxiv2020

Mycobacterium smegmatis expands across surfaces using hydraulic sliding

Mycobacterium smegmatis spreads over soft agar surfaces by sliding motility, a form of passive motility in which growth and reduction of surface adhesion enable the bacteria to push each other outwards. Hence, sliding motility is mostly associated with round colonies. However, M. smegmatis sliding colonies can also produce long, pointed dendrites. Round sliding colonies were readily reproduced, but our non-round colonies were different from those seen previously. The latter (named digitate colonies) had centimetre-long linear protrusions, containing a central channel filled with a free-flowing suspension of M. smegmatis and solid aggregates. Digitate colonies had both a surface pellicle and an inner biofilm component surrounding a central channel, which sat in a cleft in the agar. Time-lapse microscopy showed that the expansion of the fluid-filled channel enabled the lengthwise extension of the protrusions without any perceptible growth of the bacteria taking place. These observations represent a novel type of sliding motility, named hydraulic sliding, associated with a specialised colony structure and the apparent generation of force by expansion of a liquid core. As this structure requires pellicle formation without an initial liquid culture it implies the presence of an unstudied mycobacterial behaviour that may be important for colonisation and virulence. Originality-Significance StatementThis study is the first to identify a new form of passive motility in the mycobacteria; hydraulic sliding, in which liquid expansion is the cause of motility. This form of motility has so far never been described in bacteria. The study also reveals new ways mycobacteria can form biofilms and colonize complex three-dimensional substrates, aspects of mycobacterial biology that are important for infection, pathogenesis and vaccine development. Author SummaryMycobacterium smegmatis is used as a non-pathogenic model organism for pathogenic mycobacteria. During growth, M. smegmatis can move passively over soft agar surfaces by a process called sliding motility, whereby colony growth directly pushes cells outwards. Although passive, sliding motility is believed to be important in allowing bacteria to colonise surfaces. Sliding motility however does not fully account for how M. smegmatis produces dendritic colonies. We attempted to generate dendritic colonies but found instead that the cells produced colonies that had larger protrusions radiating from them (digitate colonies). Digitate colonies are a previously unobserved phenomenon, in that the bacteria create a biofilm-lined, fluid-filled, pellicle-covered, deep cleft in the agar and move across the surface by the expansion of the contained liquid core of the protrusions. Given the new structure and the new mechanism of expansion we have termed this set of behaviours hydraulic sliding. These observations are important as it is a new variation in the way bacteria can move, generate biofilms (notably mycobacterial pellicle) and colonize complex three-dimensional substrates.

microbiology↗