Search bioRxiv⌕ Search

Biology subjects

Cardoso, M. B.

Publications and source records attributed to Cardoso, M. B..

3 recordsLinked to original sources

Correlative Synchrotron X-ray Microscopy Reveals Dose- and Division-Dependent Nanoparticle Redistribution in Macrophages

Understanding the intracellular fate of nanoparticles is essential for designing safer and more effective nanomedicines, yet most studies rely on static observations and lack high-resolution, near-native volumetric information. Here, we establish a synchrotron-based correlative X-ray microscopy framework to investigate how fluorescent silica nanoparticles (SiNPs) redistribute within macrophages as a function of concentration and successive cell-division cycles. SiNPs were internalized by RAW 264.7 macrophages at different concentrations and analyzed using a synchrotron-based correlative X-ray microscopy workflow integrating cryogenic soft X-ray tomography (cryo-SXT), cryogenic structured illumination microscopy (cryo-SIM), and coherent X-ray ptychography, with confocal fluorescence microscopy used to establish population-level uptake tendencies. Cryo-SXT reveals a concentration-dependent redistribution of nanoparticle-containing vesicles from peripheral endosomes toward the perinuclear region, while correlative cryo-SIM confirms strict vesicular confinement, with no evidence of free nanoparticle diffusion into the nucleoplasm. At higher doses, nanoparticles approach the nuclear region via vesicles extending into nuclear-envelope invaginations, rather than by true nuclear entry. Successive cell divisions redistribute the intracellular nanoparticle load and promote stable perinuclear clustering, identifying a long-term sequestration route in macrophages. Coherent X-ray ptychography further reveals nanoscale deformations of the nuclear envelope associated with dense perinuclear vesicles. Together, these results establish synchrotron-based correlative X-ray microscopy as a mechanistic, multiscale platform for unveiling the dynamic intracellular fate of nanoparticles and providing mechanistic insight into their apparent nuclear localization.

cell biology↗

High-Resolution 3D Histology of the Murine Kidney Using Synchrotron X-Ray Micro-CT

Conventional two-dimensional (2D) histology relies upon destructive sample preparation and stereological estimation, frequently leading to sampling bias and loss of critical spatial context required for understanding renal structure relationships. Here, we detail a novel pipeline for high-resolution 3D histology of ex vivo murine kidneys using X-ray micro-computed tomography (micro-CT) at the high flux of a synchrotron light source, the architecture of the nephron and associated microvasculature necessitates three-dimensional (3D) analysis to accurately characterize its complexity. Soft-tissue contrast was optimized through an established phosphotungstic acid (PTA) staining protocol, enabling robust mapping of macro and microstructures via absorption contrast. Multi-scale imaging was performed, providing whole-organ context at resolutions around 3 m and achieving sub-micron detail (down to 400 nm) in targeted regions of interest (ROI) of the renal cortex. Utilizing machine learning segmentation pipelines optimized for large volumetric datasets, we extracted crucial 3D quantitative morphometric data. The results presented herein demonstrate accuracy and morphological insight achievable through synchrotron-based 3D imaging, establishing a robust method for quantitative preclinical research.

systems biology↗

Fractionation-Free Protein Corona Quantification Through Synchrotron-Based Small-Angle X-ray Scattering

When nanoparticles (NPs) enter biological environments, they are rapidly coated by biomolecules, forming the protein corona (PC) that defines their biological identity and dictates how NPs are recognized, distributed, and processed by living systems. Capturing the authentic features of the PC demands experimental conditions that preserve its native state, which are difficult to achieve once NPs are removed from their biological milieu. Despite significant progress, current PC quantification methods still rely on separating the NP-PC complex from its native environment, which compromises the coronas integrity and prevents accurate evaluation of its physicochemical properties. Here, we introduce a fractionation-free approach based on synchrotron small-angle X-ray scattering (SAXS) to quantitatively determine the amount of protein adsorbed onto silica NPs under native conditions. By modeling the scattering contribution of free versus bound proteins, we directly extracted the adsorbed mass in both single-protein (BSA) and complex proteomic (human serum) systems. The resulting adsorption isotherms enabled the determination of thermodynamic parameters such as binding constants and cooperativity, distinguishing between monolayer and multilayer adsorption regimes. Together, these findings establish SAXS as a robust, non-invasive, and quantitative technique for probing the protein corona in situ, without perturbing the native equilibrium. This methodology paves the way for the development of new in situ analytical frameworks across diverse nanomaterial and proteomic systems, advancing SAXS toward quantitative characterization of the protein corona. Table of Contents Graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=108 SRC="FIGDIR/small/695217v1_ufig1.gif" ALT="Figure 1"> View larger version (37K): org.highwire.dtl.DTLVardef@eea1f1org.highwire.dtl.DTLVardef@c9dcdforg.highwire.dtl.DTLVardef@c3dff6org.highwire.dtl.DTLVardef@1a49813_HPS_FORMAT_FIGEXP M_FIG C_FIG High-throughput synchrotron SAXS enables in situ, quantitative tracking of protein corona formation on nanoparticles.

biophysics↗