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Capdevila, P.

Publications and source records attributed to Capdevila, P..

18 recordsLinked to original sources

Time-lagged causal inference corroborates presumed drivers of North Atlantic seabird ecology

Disentangling causation from correlation is the foundation of the scientific method. Yet, growing evidence suggests that much observational ecology research has not correctly made this distinction due to inappropriate statistical modelling and unappreciated time-delays. Here, we apply time-lagged causal inference techniques to assess the drivers of seabird declines, using multi-decadal North Atlantic seabird data across the behaviour, mass, survival, reproduction and population size of two species ecology (Atlantic puffin, Fratercula arctica, and black-legged kittiwake, Rissa tridactyla). We demonstrate that both climate and anthropogenic activity can suppress breeding success and cause population declines. Moreover, population size is specifically impacted by delayed recruitment effects where both species decline after a lag corresponding to their estimated age of first reproduction. These North Atlantic seabirds are therefore at risk from future environmental and anthropogenic changes, as time-delays may result in populations already on an extinction trajectory prior to changes being detectable in their abundance.

ecology↗

Halting predicted vertebrate declines requires tackling multiple drivers of biodiversity loss

Anthropogenic threats are reshaping Earths biodiversity at an unprecedented rate and scale1-3. Conservation policies often prioritise threats like habitat loss and exploitation based on their global prevalence. However, these assessments rarely quantify the impacts of individual or interacting threats, potential masking the true effects of the Anthropocene4-6. Here, we quantitatively analyse the trends of 3,129 vertebrate populations worldwide with documented exposure to specific and multiple threats. Populations impacted solely by habitat loss or exploitation, the most prevalent threats, do not show the fastest declines. Rather, populations exposed to disease, invasive species, pollution, and climate change decline more rapidly. However, habitat loss and exploitation - along with climate change - do act as additive interactive threats, amplifying population declines. Notably, these interactive threats contribute to population declines, more than temporal or spatial sources of variation. Finally, counterfactual scenarios show that to achieve global non-negative vertebrate population trends, we need to mitigate the effects of multiple threats. These findings underscore the urgency of addressing the compounding effects of multiple threats to halt biodiversity loss and suggest that the local-scale impacts of climate change may be more severe than previously recognized.

ecology↗

Long-term effects of ocean acidification and its interaction with warming on calcifying organisms and their associated microbiome: bryozoans as emerging sentinels of global change?

Global ocean warming and acidification are two of the major threats to many marine calcifying habitat-forming species, potentially affecting entire ecosystems. Consequently, the need for a better understanding and predicting the response of marine calcifiers has never been more pressing. Paradoxically, the individual and combined long-term effects of these stressors on bryozoans have remained largely unexplored, despite their great abundance and diversity globally. Here, we first evaluate the changes in skeletal structure and mineralogy, and the associated microbiome composition on the populations of Pentapora ottomuelleriana (encrusting) and Myriapora truncata (erect) bryozoan species living inside and outside a volcanic CO2 vent in Ischia Island. We then examine the effects of a long-term exposure to elevated pCO2 and its combined effects of ocean warming on the proportion of cover of populations of the encrusting species through time after summer. Both bryozoan species show indicators of acclimatization by adjusting skeletal properties and having stable microbial communities under acidification conditions. However, we document novel patterns about microbiome shifts in response to future ocean acidification in bryozoans for the first time. Microbial genera known to have essential functions to the host such as biosynthesis of defense compounds or thermal protection were depleted at the acidified site, which suggest early warnings of potential deterioration of bryozoan health under near future ocean conditions. The proportion of cover of the encrusting species also decreased from 2016 to 2020 in both studied sites, with faster declines at the acidified ones. Our model suggests that the increasing seawater temperature drove a decline in the bryozoan cover although the combined effects with acidification accelerated its mortality rates in the CO2 vent. More multidisciplinary research combining both environmental stressors on a wider range of calcifying species is needed to better understand the adaptive capacity of the holobiont to a changing environment. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=187 SRC="FIGDIR/small/601120v1_ufig1.gif" ALT="Figure 1"> View larger version (98K): org.highwire.dtl.DTLVardef@1da75a5org.highwire.dtl.DTLVardef@161d3c6org.highwire.dtl.DTLVardef@196857eorg.highwire.dtl.DTLVardef@1161a2a_HPS_FORMAT_FIGEXP M_FIG C_FIG

ecology↗

Marine heatwaves favour resistant Mediterranean octocoral populations at the expense of their speed of recovery

1. The effects of climate change are now more pervasive than ever. Marine ecosystems have been particularly impacted by climate change, with Marine Heat Waves (MHWs) being a strong driver of mass mortality events. Even in the most optimistic greenhouse gas emission scenarios, MHWs will continue to increase in frequency, intensity, and duration. For this reason, understanding the resilience of marine species to the increase of MHWs is crucial to predicting their viability under future climatic conditions. 2. In this study, we explored the consequences of Marine Heatwaves (MHWs) on the resilience of a Mediterranean key octocoral species, Paramuricea clavata, to further disturbances to their population structure. To quantify P. clavatas capacity to resist and recover from future disturbances, we used demographic information collected from 1999 to 2022, from two different sites in the NW Mediterranean Sea. 3. Our results showed that the differences in the dynamics of populations exposed and those not exposed to MHWs were driven mostly by differences in mean survivorship and growth. We also showed that after MHWs P. clavata populations had slower rates of recovery but did not experience changes in resistance. Populations exposed to MHWs had lower resistance elasticity to progression but higher stasis compared to unexposed populations. In contrast, the only demographic process showing some differences when comparing the speed of recovery elasticity values between populations exposed and unexposed to MHWs was stasis. Finally, under scenarios of increasing frequency of MHWs, the extinction of P. clavata populations will accelerate and their capacity to recover after further disturbances will be hampered. 4. Overall, these findings confirm that future climatic conditions will make octocoral populations even more vulnerable to further disturbances. These results highlight the importance of limiting local impacts on marine ecosystems to dampen the consequences of climate change.

ecology↗

Leaf metabolic traits reveal hidden dimensions of plant form and function

The plant metabolome encompasses the biochemical mechanisms through which evolutionary and ecological processes shape plant form and function1,2. However, while the metabolome should thus be an important component of plant life-history variation3, we know little about how it varies across the plant kingdom. Here, we use the plant functional trait concept4 - a powerful framework for describing plant form and function5-7 - to interpret leaf metabolome variation among 457 tropical and 339 temperate plant species. Distilling metabolite chemistry into five discriminant metabolic functional traits reveals that plants vary along two major axes of leaf metabolic specialization - a leaf chemical defense spectrum and an expression of leaf longevity. These axes are qualitatively consistent for tropical and temperate species, with many trait combinations being viable. However, axes of leaf metabolic specialization vary orthogonally to life-history strategies described by widely used functional traits5-7, while being at least equally important to them. Our findings question classical trait6 and plant defense8 theory that predicts relationships between the leaf chemical phenotype, plant productivity, and pace of life. Moreover, we show that metabolic functional traits describe unique dimensions of plant life-history variation that are complementary to, and independent from, those captured by existing plant functional traits.

ecology↗

A standard protocol to report discrete stage-structured demographic information

O_LIStage-based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology, and conservation science. Accordingly, MPMs now exist for over 3,000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open-access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported. C_LIO_LIHere, we summarise current issues related to the parameterisation and reporting of MPMs that arise most frequently and outline how they affect MPM construction, analysis, and interpretation. To quantify variation in how MPMs are reported, we present results from a survey identifying key aspects of MPMs that are frequently unreported in manuscripts. We then screen COMPADRE and COMADRE to quantify how often key pieces of information are omitted from manuscripts using MPMs. C_LIO_LIOver 80% of surveyed researchers (n=60) state a clear benefit to adopting more standardised methodologies for reporting MPMs. Furthermore, over 85% of the 300 MPMs assessed from COMPADRE and COMADRE omitted one or more elements that are key to their accurate interpretation. Based on these insights, we identify fundamental issues that can arise from MPM construction and communication and provide suggestions to improve clarity, reproducibility, and future research utilising MPMs and their required metadata. To fortify reproducibility and empower researchers to take full advantage of their demographic data, we introduce a standardized protocol to present MPMs in publications. This standard is linked to www.compadre-db.org, so that authors wishing to archive their MPMs can do so prior to submission of publications, following examples from other open-access repositories such as DRYAD, Figshare, and Zenodo. C_LIO_LICombining and standardising MPMs parameterized from populations around the globe and across the tree of life opens up powerful research opportunities in evolutionary biology, ecology, and conservation research. However, this potential can only be fully realised by adopting standardised methods to ensure reproducibility. C_LI

ecology↗

Global patterns of plant form and function are strongly determined by evolutionary relationships

Plants display an incredible variety of forms and functions, which sustains a vast diversity of ecosystems on Earth. This diversity is the result of two forces: environmental filtering, the selection of phenotypes fit to a specific habitat; and evolutionary history, genetic constraints that determine the potential adaptations that species may evolve. To date, most studies have focused on describing macroecological patterns of trait variation, while the role of evolutionary history in determining these patterns has remained much less explored. Here, we combine a traits dataset including 4,213 vascular plant species with a phylogeny of the plant kingdom, to determine the influence of evolutionary history on the patterns of trait variation. Our results show that commonly used plant traits, such as plant height or leaf nitrogen, are strongly constrained by evolutionary history. Accounting for phylogenetic relationships changes the variance explained by the main axes of trait variation in the Plant Kindgom --the leaf economic spectrum and the plant size and organ axis continuum-- with the former explaining more variance than the latter. Moreover, we demonstrate that the plant size continuum is more influenced by evolutionary history than the leaf economics spectrum. These results highlight the influence of evolutionary history in shaping plant life history strategies and the importance of accounting for phylogeny in trait-based studies.

ecology↗

Overconfidence undermines global wildlife abundance trends

In the face of rapid global change and an uncertain fate for biodiversity, it is vital to quantify trends in wild populations. These trends are typically estimated from abundance time series for suites of species across large geographic and temporal scales. Such data implicitly contain phylogenetic, spatial, and temporal structure which, if not properly accounted for, may obscure the true magnitude and direction of biodiversity change. Here, using a novel statistical framework to simultaneously account for all three of these structures, we show that the majority of current abundance trends estimates among 10 high-profile datasets, representing millions of abundance observations, are likely unreliable or incorrect. Our new approach suggests that previous models are too simplistic, incorrectly estimating global abundance trends and often dramatically underestimating uncertainty, an aspect that is critical when translating global assessments into policy outcomes. Further, our approach also results in substantial improvements in abundance forecasting accuracy. Whilst our results do not improve the outlook for biodiversity, our framework does allow us to make more robust estimates of global wildlife abundance trends, which is critical for developing policy to protect our biosphere.

ecology↗

Evolutionary processes, not environmental drivers, determine the resilience of natural populations

Escalating climatic and anthropogenic pressures expose ecosystems worldwide to increasingly frequent disturbances. Yet, our ability to forecast the responses of natural populations to these disturbances is impeded by a limited understanding for how exposure to stochastic environments shapes population resilience. Instead, the resilience, and vulnerability, of natural populations to ongoing global change is often presumed based on their contemporary exposure to environmental stochasticity. To test the validity of this assumption, we investigated the association between the resilience attributes (e.g., resistance and recovery) of natural animal and plant populations, and measures of local environmental stochasticity (e.g., spectral frequency and abiotic range); collating data from 2,242 populations across 369 animal, plant, and algal species. Unexpectedly, recent abiotic stochasticity regimes from the past 50 years do not predict the inherent ability of populations to resist or recover from disturbances. Instead, population resilience is strongly affected by phylogenetic relationships among species, with survival and developmental investments shaping their responses to stochastic regimes. Contrary to the classical assumption that exposure to recent environmental shifts confers a greater ability to cope with current and future global change, our findings suggest that population resilience is a consequence of evolutionary processes and/or deep-time environmental regimes. Significance statementPopulations that currently endure more variable abiotic conditions are often expected to be less vulnerable to future increases in climatic variability. However, without defining the link between abiotic variability and the capacity for populations to resist and recover following disturbances (i.e., their resilience), we cannot predict the consequences of ongoing community reassembly. Evaluating the association between measures of abiotic variability and the resilience attributes of 2,242 animal, plant, and algae populations, we discredit the assumption that contemporary exposure to more frequent environmental shifts confers a greater ability to cope with future global change. Instead, the resilience attributes of natural populations appear to have been moulded over longer-term evolutionary timeframes and are thus not a response to more recent experiences.

ecology↗

MOSAIC: A Unified Trait Database to Complement Structured Population Models

O_LIThe ecological sciences have joined the big data revolution. However, despite exponential growth in data availability, broader interoperability amongst datasets is still needed to unlock the potential of open access. The interface of demography and functional traits is well-positioned to benefit from said interoperability. Trait-based ecological approaches have been criticised because of their inability to predict fitness components, the core of demography; likewise, demographic approaches are data-hungry, and so using traits as ecological shortcuts to understanding and forecasting population viability could offer great value. C_LIO_LIHere, we introduce MOSAIC, an open-access trait database that unlocks the demographic potential stored in the COMADRE, COMPADRE, and PADRINO open-access databases. MOSAIC data have been digitised and curated through a combination of existing datasets and additional taxonomic and/or trait records sourced from primary literature. In its first release, MOSAIC (v. 1.0.0) includes 14 trait fields for 300 animal and plant species: biomass, height, growth determination, regeneration, sexual dimorphism, mating system, hermaphrodism, sequential hermaphrodism, dispersal capacity, type of dispersal, mode of dispersal, dispersal classes, volancy, and aquatic habitat dependency. MOSAIC also includes species-level phylogenies for 1,359 species and population-specific climate data where locations are recorded. C_LIO_LIUsing MOSAIC, we highlight a taxonomic mismatch of widely used trait databases with existing structured population models. Despite millions of trait records available in open-access databases, taxonomic overlap between open-access demographic and trait databases is <5%. We identify where traits of interest to ecologists can benefit from database integration and start to quantify traits that are poorly quantified (e.g., growth determination, modularity). C_LIO_LIThe MOSAIC database evidences the importance of improving interoperability in open-access efforts in ecology as well as the need for complementary digitisation to fill targeted taxonomic gaps. In addition, MOSAIC highlights emerging challenges associated with the disparity between locations where different trait records are sourced. C_LI

ecology↗

Body mass and latitude as global predictors of vertebrate populations exposure to multiple threats

The interactive effects of multiple threats are one of the main causes of biodiversity loss, yet our understanding of what predisposes species to be impacted by multiple threats remains limited. Here we analyse a global dataset of over 7000 marine, freshwater, and terrestrial vertebrate populations, alongside trait, threat and geographical data, to identify the factors influencing the number of threats a species is subjected to at the population level. Out of a suite of predictors tested, we find that body mass and latitude both are broadly available for vertebrate species, and influence the number of threats a population is subjected to. Larger bodied species and those nearer the equator are typically affected by a higher number of threats. However, whilst this pattern broadly holds across ecosystems for most taxa, amphibians and reptiles show opposing trends. We suggest that latitude and body mass should be considered as key predictors to identify which vertebrate populations are likely to be impacted by multiple threats. These general predictors can help to better understand the impacts of the Anthropocene on global vertebrate biodiversity and design effective conservation policies.

ecology↗

Human pressures filter out the less resilient demographic strategies in natural populations of plants and animals worldwide

Human activities are drastically reshaping Earths ecosystems. Across the tree of life, species become threatened and ultimately go extinct when they are unable to cope with these changes. Hence, understanding the resilience of natural populations is necessary to understand and predict species capacity to cope with increasing human pressures. Here, we use high-resolution demographic information for 921 populations of wild plants and animals to assess how they respond to increasing levels of human pressure. We show that fewer successful resilience strategies, allowing population to persist in disturb environments, exist in human-influenced habitats compared to pristine habitats. In contrast, pristine habitats host species with higher resistance and faster recovery than more altered environments. Importantly, the examined macroecologial patterns of demographic resilience are kingdom- and mobility-specific: natural populations of plants recover faster and have a propensity to grow faster after a disturbance (i.e., compensation) in urban areas than in pristine habitats, while these tendencies do not appear in animals. Likewise, populations of animals with limited mobility are less able to resist or compensate for disturbances in human altered environments than highly mobile populations. Our results suggest that human activities have eroded the diversity of natural populations resilience strategies. This finding implies that species will be less tolerant to disturbance in the future, as continuing biodiversity loss and increasing human impacts will ultimately shrink the spectrum of resilience strategies of organisms.

ecology↗

Life history mediates the trade-offs among different components of demographic resilience

Summary paragraphAccelerating rates of biodiversity loss underscore the need to understand how species achieve resilience -their ability to resist and recover from a/biotic disturbances. Yet, the factors determining the resilience of species remain poorly understood, due to disagreements on its definition and the lack of large-scale analyses. Here, we investigate how the life history of 785 natural populations of animals and plants predict their intrinsic ability to be resilient. We show that demographic resilience can be achieved through different combinations of compensation, resistance, and recovery after a disturbance. We demonstrate that these resilience components are highly correlated with life history traits related to the species pace of life and reproductive strategy. Species with longer generation times require longer recovery times post-disturbance, while those with greater reproductive capacity have greater resistance and compensation. Our findings highlight the key role of life history traits to understand species resilience, improving our ability to predict how natural populations cope with disturbance regimes.

ecology↗

Rcompadre and Rage - two R packages to facilitate the use of the COMPADRE and COMADRE databases and calculation of life history traits from matrix population models

O_LIMatrix population models (MPMs) are an important tool for biologists seeking to understand the causes and consequences of variation in vital rates (e.g., survival, reproduction) across life cycles. Empirical MPMs describe the age- or stage-structured demography of organisms and usually represent the life history of a population during a particular time frame at a specific geographic location. C_LIO_LIThe COMPADRE Plant Matrix Database and COMADRE Animal Matrix Database are the most extensive resources for MPM data, collectively containing >12,000 individual projection matrices for >1,100 species globally. Although these databases represent an unparalleled resource for researchers, land managers, and educators, the current computational tools available to answer questions with MPMs impose significant barriers to potential COM(P)ADRE database users by requiring advanced knowledge to handle diverse data structures and program custom analysis functions. C_LIO_LITo close this knowledge gap, we present two interrelated R packages designed to (i) facilitate the use of these databases by providing functions to acquire, quality control, and manage both the MPM data contained in COMPADRE and COMADRE, and a users own MPM data (Rcompadre), and (ii) present a range of functions to calculate life history traits from MPMs in support of ecological and evolutionary analyses (Rage). We provide examples to illustrate the use of both. C_LIO_LIRcompadre and Rage will facilitate demographic analyses using MPM data and contribute to the improved replicability of studies using these data. We hope that this new functionality will allow researchers, land managers, and educators to unlock the potential behind the thousands of MPMs and ancillary metadata stored in the COMPADRE and COMADRE matrix databases, and in their own MPM data. C_LI

ecology↗

Mapping extinction risk in the global functional spectra across the tree of life

Although one quarter of the species of plants and vertebrates are threatened with extinction, little is known about how the potential effect of extinctions on the global diversity of ecological strategies. Using trait and phylogenetic information for more than 75,000 species of plants, mammals, birds, reptiles, amphibians and freshwater fishes, we characterized the global functional spectra of each of these groups. Mapping of extinction risk within these spectra revealed that larger species with slower pace of life are universally threatened. Simulated potential extinctions revealed extensive internal reorganizations in the global functional spectra, which are particularly severe for mammals and amphibians. Considering the disproportionate importance of the largest species for ecological processes, our results emphasize the importance of actions to prevent the extinction of the megabiota.Competing Interest StatementThe authors have declared no competing interest.View Full Text

ecology↗

The demographic buffering strategy has a threshold of effectiveness to increases in environmental stochasticity

O_LIAnimal populations have developed multiple strategies to deal with environmental change. Among them, the demographic buffering strategy consists on constraining the temporal variation of the vital rate(s) (e.g., survival, growth, reproduction) that most affect(s) the overall performance of the population. Given the increase in environmental stochasticity of the current global change scenario, identifying the thresholds beyond which populations are not able to remain viable -despite their potential buffering strategies- is of utmost importance. C_LIO_LITortoises are known to buffer the temporal variation in survival (i.e. this vital rate has the highest contribution to the population growth rate{lambda} ) at the expense of a high variability on reproductive rates (lowest contribution to{lambda} ). To identify the potential threshold in buffering ability, here we use field data collected across a decade on 15 locations of Testudo graeca along South-Eastern Spain. We analyse the effects of environmental variables (precipitation, temperature, and NDVI) on the probability of laying eggs and the number of eggs per clutch. Finally, we couple the demographic and environmental data to parametrise integral projection models (IPMs) to simulate the effects of different scenarios of drought recurrence on population growth rate. C_LIO_LIWe find that droughts negatively affect the probability of laying eggs, but the overall effects on the population growth rates of T. graeca under the current drought frequencies (one per decade) are negligible. However, increasing the annual frequency of droughts decreases the buffering ability of T. graeca populations, with a threshold at three droughts per decade. C_LIO_LIAlthough some species may buffer current environmental regimes by carefully orchestrating how their vital rates vary through time, a demographic buffering strategy may alone not warrant population viability in extreme regimes. Our findings support the hypothesis that the buffering strategy indeed has a threshold of effectiveness. Our methodological approach also provides a useful pipeline for ecologists and managers to determine how effective the management of environmental drivers can be for demographically buffering populations, and which scenarios may not provide long-term species persistence. C_LI

ecology↗

Towards a comparative framework of demographic resilience

In times of global biodiversity crisis, developing tools to define, quantify, compare and predict ecological resilience is essential for understanding species responses to global change. Disparate interpretations of ecological resilience have, however, hampered the development of a common currency to quantify and compare resilience across natural systems. Most frameworks of study have focused on upper levels of biological organisation, especially ecosystems or communities, which adds layers of complication to measuring resilience with empirical data. To overcome such limitations, we suggest quantifying resilience using demographic data. Surprisingly, a quantifiable definition of resilience does not exist at the demographic level. Here, we present a framework of demographic resilience with a set of metrics that are comparable across species, and facilitate cost-effective management decisions.

ecology↗

Aquatic and terrestrial organisms display contrasting life history strategies as a result of environmental adaptations

AimsAquatic and terrestrial realms display stark differences in key environmental factors and phylogenetic composition. Despite such differences, their consequences for the evolution of species life history strategies remain poorly understood. Here, we examine whether and how life history strategies vary between terrestrial and aquatic species.\n\nLocationGlobal.\n\nTime periodVariable, the earliest year being in 1906 and the most recent in 2015.\n\nMajor taxa studiesMacroscopic animals and plants species.\n\nMethodsWe use demographic information for 638 terrestrial and 117 aquatic animal and plant species, to derive key life history traits capturing their population turnover, and investments in survival, development, and reproduction. We use phylogenetically corrected least squares regression to explore the differences in the trade-offs between life history traits in both realms. We then quantify the life history strategies of aquatic and terrestrial species using a phylogenetically corrected principal component analysis.\n\nResultsWe find that the same trade-offs structure terrestrial and aquatic life histories, resulting in two dominant axes of variation describing species pace- of-life and reproductive spread through time. Life history strategies differ between aquatic and terrestrial environments, with phylogenetic relationships playing a minor role. We show that adaptations of plants and animals to terrestrial environments have resulted in different life history strategies, particularly with their reproductive mode and longevity. Terrestrial plants display a great diversity of life history strategies, including the species with the longest lifespans. Aquatic animals, on the contrary, exhibit higher reproductive frequency than terrestrial animals, likely due to reproductive adaptations (i.e. internal fecundation) of the later to land.\n\nMain conclusionsOur findings show that aquatic and terrestrial species are ruled by the same life history principles, but have evolved different strategies due to distinct selection pressures. Such contrasting life history strategies have important consequences for the conservation and management of aquatic and terrestrial species.

ecology↗