Search bioRxiv⌕ Search

Biology subjects

Campi, M.

Publications and source records attributed to Campi, M..

2 recordsLinked to original sources

Mechanism-Specific Speech Encoding Failures in Auditory Neuropathy: A Computational Phenotyping Framework

AO_SCPLOWBSTRACTC_SCPLOWAuditory nerve disorders, including auditory neuropathy spectrum disorders (ANSD), show distorted patterns of auditory nerve activity despite preserved spectral analysis of sound in the cochlea, producing impaired speech recognition despite normal auditory sensitivity. Distinct pathophysiological mechanisms affecting auditory-nerve activity have been identified in animal models, but current clinical speech tests were not designed to distinguish among them, because they average performance across phoneme categories, collapsing mechanism-specific confusion patterns into a single intelligibility score. Using computational modeling of auditory nerve responses, we simulated four candidate mechanisms and showed that their encoding disruptions cascade into systematic, phoneme-specific recognition failures: brief consonants were severely degraded while sustained vowels were preserved, and each mechanism produced a distinct confusion pattern. Models trained on ANSD-degraded signals developed compensation strategies that generalized to healthy signals, while the reverse did not, and noise training that benefited healthy models harmed ANSD models, mirroring real-world listening difficulty. Because simulation fixes the generating mechanism by construction, we could then measure directly how much mechanism-specific information each behavioral representation preserves. Aggregate word scoring discarded most of the information retained in the full confusion matrix, yet a handful of targeted phonetic contrasts recovered the mechanism. Simulation uniquely enables this analysis because the underlying mechanism is known, a property currently unavailable in patient datasets. Rather than offering direct diagnosis from behavior alone, the framework quantifies what aggregate scoring destroys and identifies the contrasts that best separate mechanisms, a principled route toward phonetically efficient tests that recover mechanistic information current scoring discards.

neuroscience↗

Field-tested HaHB11 and HaHB4 soybean exhibit increased grain number and heat tolerance at the reproductive stage

Soybean is one of the primary sources of vegetable oil and protein worldwide. However, its yield improvement has lagged behind the other major crops. This study explored the potential of the sunflower transcription factor HaHB11 to enhance soybean yield and heat stress tolerance. We generated transgenic soybean plants expressing HaHB11 and evaluated their performance across four field trials. The HaHB11 plants showed a significant increase in grain number per plant compared to controls, which can be related to an increased number of nodes and pods per plant. Flowering dynamics analysis revealed delayed blooming and an increased number of flowers per node, leading to a higher pod set, particularly between nodes four and six. Principal component analysis across field trials identified temperature as a crucial factor influencing grain number, enhancing the differences exhibited by HaHB11 plants. The pollen from transgenic plants germinated better, and tubes were longer than controls under heat stress. Carbohydrate distribution analyses indicated differential allocation of nutrients, supporting the increased pod and grain set in HaHB11 plants. Additionally, vegetation indices can distinguish HaHB11 plants from controls in several developmental stages. These results indicated that HaHB11 enhances soybean yield under heat stress, becoming a promising technology for soybean improvement. HighlightSoybean transformed with the sunflower gene HaHB11 was tested in the field for four campaigns, showing differential allocation of nutrients, increased number of nodes, pods, grains, and heat tolerance.

plant biology↗