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Biology subjects

Butera, F.

Publications and source records attributed to Butera, F..

2 recordsLinked to original sources

Re-engineering of TNFα-NF-κB signalling dynamics in cancer cells using pathogenic E. coli effectors

Re-engineering NF-{kappa}B signalling towards enhancing beneficial outcomes such as tumour cell elimination, while minimising inflammatory damage, is a potential therapeutic avenue. In this study, we explored the ability of bacterial effectors injected into host cells by the type III secretion system to regulate NF-{kappa}B translocation dynamics. We used the enteropathogenic Escherichia coli effectors Tir (NF-{kappa}B activator), NleC (NF-{kappa}B protease) and NleE (TAB2/3 methyltransferase), to manipulate NF-{kappa}B translocation and cancer cell survival. We discovered that while these effectors have either limited or no cytotoxicity alone, they greatly enhanced caspase-8-dependent pancreatic cancer cell death in the presence of TNF. Single cell analysis revealed that the sub-population of cells showing high NF-{kappa}B activation is less susceptible to cell death caused by NleC or NleE but instead is more susceptible to Tir. A combination of Tir, NleE and TNF eliminated 95% cancer cells with limited NF-{kappa}B activation, potentially due to NleE-dependent blockage of the immediate pro-survival NF-{kappa}B activation without inhibiting Tirs long-term NF-{kappa}B activation that promotes cell death. This work demonstrates that effector combinations could be used to re-engineer stress responses towards favourable outcomes.

cell biology↗

Actin networks modulate heterogenous NF-κB dynamics in response to TNFα

The canonical NF-{kappa}B transcription factor RELA is a master regulator of immune and stress responses and is upregulated in PDAC tumours. Here, we characterised previously unknown endogenous RELA-GFP dynamics in PDAC cell lines by live single cell imaging, which revealed rapid, sustained and non-oscillatory nuclear RELA following TNF stimulation. Using Bayesian analysis of single cell datasets with variation in nuclear RELA, we computationally predicted that RELA heterogeneity in PDAC cell lines is dependent on F-actin dynamics. By RNA-seq, we identified the actin regulators NUAK2 and ARHGAP31 as transcriptionally regulated by RELA. In turn, NUAK2 or ARHGAP31 siRNA depletion downregulates TNF-stimulated RELA nuclear localisation in PDAC cells, establishing a novel negative feedback loop regulating RELA activation by TNF. We identify an additional actin-independent feedback loop involving RELB, which suppresses TNF-mediated RELA nuclear localisation following RELA mediated upregulation of RELB. Taken together, we provide computational and experimental support for interdependence between the F-actin network and RELA translocation dynamics in PDAC.

cancer biology↗