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Burmeister, N. G.

Publications and source records attributed to Burmeister, N. G..

2 recordsLinked to original sources

Simultaneous and Dynamic Super-Resolution Imaging of Two Proteins in Arabidopsis thaliana using dual-color sptPALM

Super-resolution microscopy techniques have revolutionized cell biology by providing insights into single-molecule dynamics and nanoscale organization within living cells. However, the application of dynamic live-cell methods in plants remains limited by the availability of suitable fluorophores for simultaneous visualization of multiple proteins. To address this challenge, we implemented a dual-color single-particle tracking photoactivated localization microscopy (sptPALM) approach based on codon-optimized photoactivatable fluorescent proteins PA-GFP and PATagRFP. Recently, we demonstrated their individual performance in single-color experiments in Nicotiana benthamiana and Arabidopsis thaliana cells. Here, we establish their combined use for dual-color sptPALM, enabling the simultaneous tracking of two distinct protein species within the same plant cell. This approach provides a framework to investigate the coordinated dynamics, interactions, and spatial organization of multiple proteins in living plant cells.

plant biology↗

GreenMemTraX: A User-Friendly Software for Super-Resolution Analysis of Membrane Protein Dynamics and Nanoscale Organization in Plants

Super-resolution microscopy (SRM) approaches revolutionize cell biology by providing insights into the nanoscale organization and dynamics of macromolecular assemblies and single molecules in living cells. A major hurdle limiting SRM democratization is post-acquisition data analysis which is often complex and time-consuming. Here, we present OneFlowTraX, a user-friendly and open-source software dedicated to the analysis of single-molecule localization microscopy (SMLM) approaches such as single-particle tracking photoactivated localization microscopy (sptPALM). Through an intuitive graphical user interface, OneFlowTraX provides an automated all-in-one solution for single-molecule localization, tracking, as well as mobility and clustering analyses. OneFlowTraX allows the extraction of diffusion and clustering parameters of millions of molecules in a few minutes. Finally, OneFlowTraX greatly simplifies data management following the FAIR (Findable, Accessible, Interoperable, Reusable) principles. We provide a detailed step-by-step manual and guidelines to assess the quality of single-molecule analyses. Applying different fluorophores including mEos3.2, PA-GFP, and PATagRFP, we exemplarily used OneFlowTraX to analyze the dynamics of plant plasma membrane-localized proteins including an aquaporin, the brassinosteroid receptor Brassinosteroid Insensitive 1 (BRI1) and the Receptor-Like Protein 44 (RLP44).

plant biology↗