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Budd, A.

Publications and source records attributed to Budd, A..

2 recordsLinked to original sources

The BEAC, an epigenetic clock for birds

Epigenetic clocks are powerful tools for estimating both chronological and biological age, enabling the integration of age information into population monitoring, demographic modelling, and research on the ecophysiology and evolution of ageing. Most epigenetic clocks so far have been developed for mammals: here, we present the Bird Epigenetic Ageing Clock (BEAC) for estimating chronological age in avian species. BEAC was established based on genome-wide enzymatic methylation sequencing data of known-age king penguins (Aptenodytes patagonicus), and validated in nine other bird species. The BEAC collects age-informative signals into a bisulfite amplicon sequencing panel of 24 primer pairs, providing a highly accurate and cost-effective alternative to sequencing-intensive approaches. It achieved strong predictive performance in independent king penguin training (R{superscript 2}=0.88; MAE=1.7 years, n=78) and testing data (R{superscript 2}=0.79; MAE=2.3 years, n=41), with negligible batch effects, high longitudinal consistency, and resilience to reduced sample size or missing loci. Importantly, cross-species validation across 180 samples showed that BEAC reliably captures age-associated methylation signals in nine additional bird species across seven clades, demonstrating that a single set of loci can be predictive of ageing across multiple different bird species. BEAC offers a flexible, empirically validated tool and a transferable framework for developing epigenetic clocks in avian species, providing a highly valuable resource for eco-evolutionary studies of ageing in wild species.

molecular biology↗

No Effect of Value on the Task Irrelevant Auditory Mismatch Negativity

Behavioural and neuroscientific evidence suggests visual stimuli that signal value involuntarily capture attention and are preferentially processed, even when unattended. We examined whether learned value associations for task-irrelevant auditory stimuli modulate pre-attentive processing and involuntarily capture attention. Across two experiments, the effect of learned value on the visual- and auditory-evoked mismatch negativity (MMN) and P3a event-related potential (ERP) components was measured. Participants performed a primary visual detection task while an irrelevant, unattended oddball stimulus stream was concurrently presented. Deviants within this oddball stream had been previously learned to signal one of several value outcomes: monetary reward, loss or no change. Neither the auditory nor the visual MMN was influenced by these value associations. However, stimulus value affected performance on the primary task and the magnitude of the P3a in those who could identify the stimulus-value pairings at test. Supplementary mass univariate analyses and time frequency decomposition (theta phase-locking) confirmed the presence of the MMN and the absence of any influence of stimulus value on the MMN response. Findings suggest that learned value associations do not meaningfully influence the MMN prediction signaling mechanism for task-irrelevant auditory stimuli.

neuroscience↗