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Biology subjects

Buckley, Y.

Publications and source records attributed to Buckley, Y..

3 recordsLinked to original sources

Two decades of Novel Ecosystems: Literature analysis of topics, trends and connectivity

1. As human-driven climate change and other anthropogenic forces produce widespread impacts on biodiversity and ecosystem functioning, many ecosystems are shifting into unprecedented, novel states. The Novel Ecosystem Concept (NEC), formalized in 2006, was developed as an alternative framework for managing "novel ecosystems", human-altered systems that are challenging to restore to their historical state. In the years since, the NEC has been proposed as a broader lens for ecosystem management under ongoing global change. 2. We evaluated how the uptake and potential of the NEC have been realized over time using a bibliometric and linguistic toolkit. Using bibliometric data from the Web of Science, we clustered 40,914 applied ecology papers published between 2006 and 2025 into twenty research topics based on language use. We quantified the volume of NEC research within each topic, rates of publication over time, and cross-topic connectivity proxied by citations. 3. We found NEC research in most of the topics of applied ecology, particularly invasion biology, ecosystem services, soil research and studies of freshwater, urban and marine systems. In contrast, several major conservation-focused topics, including protected areas, threatened species, and human-wildlife interactions, contained little research with an explicit link to novel ecosystems. Publication rates increased across all topics, although growth slowed over time. At the same time, NEC research became more focused into ecosystem-specific topics, especially marine ecosystems. NEC research across different topics was well-connected by citations, with papers more likely to cite each other when they used similar language. 4. Overall, the NEC does not appear to have expanded beyond its origins in restoration to become a broadly applied framework across conservation and ecosystem management. Instead, the concepts behind the NEC have been integrated into restoration and management frameworks grappling with climate and other anthropogenic change, while "novelty" is emerging as a powerful quantitative variable for measuring ecological change over space and time. Our results highlight the potential value of bibliometric and linguistic tools to deconstruct the ecological literature to inform what we can, or should, do to intervene for benefit of nature and people.

ecology↗

Structural Basis for Regulated Assembly of the Mitochondrial Fission GTPase Drp1

Mitochondrial fission is crucial for distributing cellular energy throughout cells and for isolating damaged regions of the organelle that are targeted for degradation. This multistep process is initiated by the enhanced recruitment and oligomerization of dynamin-related protein 1 (Drp1) at the surface of mitochondria. As such, Drp1 is essential for inducing mitochondrial division in mammalian cells, and homologous proteins are found in all eukaryotes. De novo missense mutations in the Drp1 gene, DNM1L, are associated with severe neurodevelopmental diseases in patients, and no effective treatments are available. As a member of the dynamin superfamily of proteins (DSPs), controlled Drp1 self-assembly into large helical polymers stimulates its GTPase activity to promote membrane constriction. Still, little is known about the regulatory mechanisms that determine when and where Drp1 self-assembles, and proper mitochondrial dynamics requires correct spatial and temporal assembly of the fission machinery. Here we present a cryo-EM structure of a full-length, native Drp1 dimer in an auto-inhibited state. This dimer reveals two key conformational rearrangements that must be unlocked through intermolecular interactions to achieve the assembly competent state previously observed in crystal and filament structures. Specifically, the G domain is closed against the stalk domain and occludes intermolecular interactions necessary for self-assembly beyond a dimer. Similarly, adjacent stalks in the dimer form a more continuous interface that further occludes conserved intermolecular contact sites. This structural insight provides a novel mechanism for regulated self-assembly of the mitochondrial fission machinery.

cell biology↗

A synthetic approach reveals a highly sensitive maize auxin response circuit

Auxin plays a key role across all land plants in growth and developmental processes. Although auxin signaling function has diverged and expanded, differences in the molecular functions of signaling components have largely been characterized in Arabidopsis thaliana. Here, we used the Auxin Response Circuit recapitulated in Saccharomyces cerevisiae (ARCSc) system to functionally annotate maize auxin signaling components, focusing on genes expressed during development of ear and tassel inflorescences. All 16 maize Auxin (Aux)/Indole-3-Acetic Acid (IAA) repressor proteins are degraded in response to auxin, with rates that depended on both receptor and repressor identity. When fused to the maize TOPLESS (TPL) homolog RAMOSA1 ENHANCER LOCUS2 (REL2), maize Aux/IAAs were able to repress AUXIN RESPONSE FACTOR (ARF) transcriptional activity. A complete auxin response circuit comprised of all maize components, including ZmAFB2/3 b1 maize AUXIN SIGNALING F-BOX (AFB) receptor, was found to be fully functional. The ZmAFB2/3 b1 auxin receptor was found to be more sensitive to hormone than AtAFB2 and allowed for rapid circuit activation upon auxin addition. These results validate the conserved role of predicted auxin response genes in maize, as well as provide evidence that a synthetic approach can facilitate broader comparative studies across the wide range of species with sequenced genomes. A synthetic maize auxin response circuit is recapitulated in Saccharomyces cerevisiae, revealing a highly sensitive auxin signaling network with functional homology to the Arabidopsis circuit.

plant biology↗