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Bucciarelli, G. M.

Publications and source records attributed to Bucciarelli, G. M..

2 recordsLinked to original sources

Normal table of post-embryonic larval development for the California newt, Taricha torosa

We present here a normal table for post-embryonic development in the California newt (Taricha torosa), part of a genus of newts frequently studied for their toxicity and role within a predator-prey relationship. We generated the table by observing larvae collected as eggs in the wild and hatched and reared in the lab through metamorphosis. Building upon an established table consisting of 40 embryonic stages of development, our table consists of 13 stages based on discrete anatomical changes, primarily in limb development, and concludes at Stages 12-13 when the larvae undergo metamorphosis. We also describe more gradual phenotypic changes and their correlation to discrete stages in the developmental timeline. Finally, we illustrate the variability of the timing for reaching these stages in a controlled lab environment, demonstrating that time from hatching is not a reliable metric for standardizing results for diverse studies involving developing larvae. This staging table and accompanying observations will facilitate cross-study integration of research with larval T. torosa.

zoology↗

NewtCap: an efficient target capture approach to boost genomic studies in Salamandridae (True Salamanders and Newts)

Salamanders have large and complex genomes, hampering whole genome sequencing. However, reduced representation sequencing provides a feasible alternative to obtain genome-wide data. We present NewtCap: a sequence capture bait set that targets c.7k coding regions across the genomes of all true salamanders and newts (the family Salamandridae, also known as salamandrids). We test the efficacy of NewtCap, originally designed for the Eurasian Triturus newts, in 30 species, belonging to 17 different genera, that cover all main Salamandridae lineages. We also test NewtCap in two other salamander families. We discover that NewtCap performs well across all Salamandridae lineages (but not in the salamander families Ambystomatidae and Hynobiidae). As expected, the amount of genetic divergence from the genus Triturus correlates negatively to capture efficacy and mapping success. However, this does not impede our downstream analyses. We showcase the potential of NewtCap in the contexts of; 1) phylogenomics, by reconstructing the phylogeny of Salamandridae, 2) phylogeography, by sequencing the four closely related species comprising the genus Taricha, 3) hybrid zone analysis, by genotyping two Lissotriton species and different classes of interspecific hybrids, and 4) conservation genetics, by comparing Triturus ivanbureschi samples from several wild populations and one captive-bred population. Overall, NewtCap has the potential to boost straightforward, reproducible, and affordable genomic studies, tackling both fundamental and applied research questions across salamandrids.

genomics↗