Brunner, C. A. | Search bioRxiv

bioRxiv2025

Unravelling the influence of light on inshore coral and sponge recruits and their substrate communities

Recruitment of progeny to coral reef populations involves complex ecological interactions, influenced by environmental factors such as altered underwater light conditions associated with poor water quality. Here, we exposed newly settled corals (Acropora millepora and Acropora cf. tenuis), the sponge (Phyllospongia foliascens), and their substrate communities to various light intensities and spectral profiles relevant to turbid inshore reefs. Coral and sponge recruit survivorship and growth generally exhibited an inverted U-shaped response to light intensity, suggesting environmental optima at lower light levels, while the influence of light spectra remained less clear within environmentally realistic treatment combinations. Crustose coralline algae cover similarly peaked at lower light levels, whereas turf algae increased with higher light conditions. Competitive interactions between the substrate communities and the recruits, along with photophysiological responses, were also assessed. Our results suggest that altered light characteristics associated with turbidity may not be as detrimental to coral and sponge recruits as other sediment-related stressors.

ecology↗

bioRxiv2020

Cryptic diversity masks ecologically distinct coral species on tropical reefs

Coral reefs are the epitome of species diversity, yet the number of described scleractinian coral species, the framework-builders of coral reefs, remains moderate by comparison. DNA sequencing studies are rapidly challenging this notion by exposing a wealth of undescribed diversity, but the evolutionary and ecological significance of this diversity remains largely unclear. Here, we present an annotated genome for one of the most ubiquitous corals in the Indo-Pacific (Pachyseris speciosa), and uncover through a comprehensive genomic and phenotypic assessment that it comprises morphologically indistinguishable, but ecologically divergent cryptic lineages. Demographic modelling based on whole-genome resequencing disproved that morphological crypsis was due to recent divergence, and instead indicated ancient morphological stasis. Although the lineages occur sympatrically across shallow and mesophotic habitats, extensive genotyping using a rapid diagnostic assay revealed differentiation of their ecological distributions. Leveraging "common garden" conditions facilitated by the overlapping distributions, we assessed physiological and quantitative skeletal traits and demonstrated concurrent phenotypic differentiation. Lastly, spawning observations of genotyped colonies highlighted the potential role of temporal reproductive isolation in the limited admixture, with consistent genomic signatures in genes related to morphogenesis and reproduction. Overall, our findings demonstrate how ecologically and phenotypically divergent coral species can evolve despite morphological stasis, and provide new leads into the potential mechanisms facilitating such divergence in sympatry. More broadly, they indicate that our current taxonomic framework for reef-building corals may be scratching the surface of the ecologically relevant diversity on coral reefs, consequently limiting our ability to protect or restore this diversity effectively.

evolutionary biology↗