Biology subjects

Brunel, C.

Publications and source records attributed to Brunel, C..

3 recordsLinked to original sources

bioRxiv2022

The impact of the rice production system (irrigated vs lowland) on root-associated microbiome from farmer's fields in western Burkina Faso

As a consequence of its potential applications for food safety, there is a growing interest in rice root-associated microbial communities, but some systems remain understudied. Here, we compare the assemblage of root-associated microbiota in rice sampled in 19 small farmers fields from irrigated and rainfed lowlands in western Burkina Faso, using an amplicon metabarcoding approach 16S (Prokaryotes, three plant sample per field) and ITS (fungi, one sample per field). In addition to the expected structure according to the root compartment (root vs. rhizosphere) and geographical zones, we show that the rice production system is a major driver of microbiome structure, both for prokaryotes and fungi. In irrigated systems, we found a higher diversity of prokaryotic communities from rhizosphere and more complex co-occurrence networks, compared to rainfed lowlands. Core taxa were different between the two systems, and indicator species were identified: mostly within Bacillaceae and Bradyrhizobiaceae families in rainfed lowlands, and within Burkholderiaceae and Moraxellaceae in irrigated areas. Finally, phylotypes assigned to putative phytobeneficial and pathogen species were found. Mycorrhizal fungi Glomeromycetes abundance was higher in rainfed lowlands. Our results highlight deep microbiome differences induced by contrasted rice production systems that should consequently be considered for potential microbial engineering applications.

microbiology↗

bioRxiv2020

Plant-soil feedback as a pathway of invasional meltdown

While most alien species fail to establish, some invade native communities and become widespread. Many of these communities have been invaded by multiple aliens, suggesting that aliens may cause invasional meltdowns. Here, we tested whether and how a third plant species affects the competitive outcome between alien and native plants through its soil legacy. We first conditioned soil with one of ten species (six natives and four aliens) or without plants. Then, we grew on these 11 soils, five aliens and five natives without competition, and with intra- or interspecific competition (all pairwise alien-native combinations). We found that aliens were not more competitive than natives when grown on soil conditioned by other natives or on non-conditioned soil. However, aliens were more competitive than natives on soil conditioned by other aliens. Although soil conditioning rarely affected the strength of competition between later plants, soil conditioned by aliens changed the competitive outcomes by affecting growth of aliens less negatively than that of natives. Microbiome analysis confirmed this finding by showing that the soil-legacy effects of one species on later species were less negative when their fungal endophyte communities were less similar; and that fungal endophyte communities were less similar between two aliens than between aliens and natives. Our study suggests that coexistence between aliens and natives is less likely with more alien species. Such invasional meltdown is likely mediated by spill-over of fungal endophytes, some of which are pathogenic.

ecology↗

bioRxiv2020

Evidence for Elton's diversity-invasibility hypothesis from belowground

Sixty year ago, Elton proposed that diverse communities are more resistant to biological invasion. However, still little is known about which processes could drive this diversity-invasibility relationship. Here we examined whether plant-soil feedback on alien invaders is more negative when the soil originates from multiple native species. We trained soils with five individually grown native species, and used amplicon sequencing to analyze the resulting bacterial and fungal soil communities. We mixed the soils to create trained soils from one, two or four native species. We then grew four alien species separately on these differently trained soils. In the soil-conditioning phase, the five native species built species-specific bacterial and fungal communities in their rhizospheres. In the test phase, it did not matter whether the soil had been trained by one or two native species. However, the alien species achieved 11.7% less aboveground biomass when grown on soils trained by four native species than on soils trained by two native species. Our results showed for the first time, that plant-soil feedback could be a process that contributes to the negative relationship between diversity and invasibility.

ecology↗