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Biology subjects

Brouwer, L.

Publications and source records attributed to Brouwer, L..

2 recordsLinked to original sources

A country-wide examination of effects of urbanization on common birds

Urbanization forms one of the most drastic alterations of the environment and poses a major threat to wildlife. The human-induced modifications of the landscape may affect individuals fitness and thereby result in population declines. Research on how urbanization affects fitness traits has shown mixed results, but typically contrasted data from few urban and non-urban sites collected over short time frames from single species. It thus remains unknown whether we can generalize across species, whereas such knowledge is crucial for population predictions that are needed for conservation management. Here, we use data from a nation-wide citizen science project to examine variation in survival and body mass and size of common passerine birds, collected along an urbanization gradient in the Netherlands over an 8-year period. Although the overall association between urbanization and survival was slightly negative, there was strong support for lower survival in three species, and higher survival in two of the 11 species examined. Effects of urbanization on body mass and size also varied but were far less strong and there was no evidence that they mediated the impacts on survival. Our results imply that body mass and size cannot be used as indicators for urban-associated patterns of survival. Furthermore, the species-specific survival responses indicate that care should be taken when predicting the effects of ongoing urbanization for communities, because even closely related species can show different responses. Moreover, the contrasting survival successes among species suggests that ongoing urbanization may lead to shifts in community structure and loss of biodiversity.

ecology↗

Genotypic diversity and dynamic nomenclature of Parechovirus A

Human parechoviruses (PeV-A) can cause severe sepsis and neurological syndromes in neonates and children and are currently classified into 19 genotypes based on genetic divergence in the VP1 gene. However, the genotyping system has notable limitations including an arbitrary distance threshold and reliance on insufficiently robust phylogenetic reconstruction approaches leading to inconsistent genotype definitions. In order to improve the genotyping system, we investigated the molecular epidemiology of human parechoviruses, including the evolutionary history of the different PeV-A lineages as far as is possible. We found that PeV-A lineages suffer from severe substitution saturation in the VP1 gene which limit the inference of deep evolutionary timescales among the extant PeV-A and suggest that the degree of evolutionary divergence among current PeV-A lineages has been substantially underestimated, further confounding the current genotyping system. We propose an alternative nomenclature system based on robust, amino-acid level phylogenetic reconstruction and clustering with the PhyCLIP algorithm which delineates highly divergent currently designated genotypes more informatively. We also describe a dynamic nomenclature framework that combines PhyCLIPs progressive clustering with phylogenetic placement for genotype assignment.

evolutionary biology↗