Biology subjects

Brooks, S. E.

Publications and source records attributed to Brooks, S. E..

4 recordsLinked to original sources

bioRxiv2025

Novel Role of AcylCoA:cholesterol acyltransferase 1 (ACAT1/SOAT1) in Diabetic Retinopathy

Hypercholesterolemia and excessive cholesterol ester (CE) production have been linked to chronic inflammation and vascular dysfunction during cardiovascular disease. Upregulation of AcylCoA:cholesterol acyltransferase 1 (ACAT1/SOAT1), the enzyme responsible for retinal CE formation, has been implicated in pathological retinal neovascularization. Here we determine the role of this process in diabetic retinopathy (DR). Ins2Akita diabetic mice were treated with the specific ACAT1/SOAT1 inhibitor K604 (10 mg/Kg, i.p.) beginning at 10 weeks for 2 weeks or 8 months for 2 months. ACAT1/SOAT1 expression and CE formation were assayed along with oxidative stress, inflammation, vascular pathology, and neuronal function. ACAT1/SOAT1 expression was also assayed in human retinas and vitrectomy specimens. Retinas from early-stage Ins2Akita mice exhibited increases in CE deposition, superoxide production, and expression of ACAT1/SOAT1, LDLR, TREM1, MCSF, and VEGF along with leukostasis, vascular leakage, acellular capillary formation, retinal ganglion cell loss, and impaired visual function. Late-stage increases in CE, ACAT1/SOAT, oxidative stress, inflammation, and impaired visual function were also observed. These changes were significantly inhibited by K604 treatment. The protective effects were independent of changes in systemic glucose or body weight. Human retina and vitrectomy samples also showed increases in ACAT1/SOAT1 and CE, respectively. Specific inhibition of ACAT1/SOAT1 with K604 normalizes ACAT1/SOAT1 expression and CE formation and prevents increases in oxidative stress and inflammation and preserves retinal structure and function in both early and late stages of DR. These findings identify ACAT1/SOAT1 as a promising therapeutic target for both early intervention and later stage treatment of DR. One sentence summaryInhibiting cholesterol esterification limits retinal neurovascular injury in diabetes.

cell biology↗

bioRxiv2024

Building a Collaborative DNA Barcode Library for the Diptera of Churchill, Canada: A Resource for Northern Research

Churchill, Manitoba, Canada is a diverse subarctic region that has been the focus of DNA barcoding efforts and research for decades. Despite this effort, there are still taxa in this region that are underrepresented in public databases, particularly hyper diverse insect groups. We present a collaborative large-scale DNA barcode reference library for Diptera based on molecular data and expert taxonomic identification, and we explore habitat occupancy, biogeographic patterns, and molecular evolution. The reference library contains 16786 specimens sampled around Churchill from 2005 to 2011. Selected specimens were identified by morphological means, sequenced for the animal barcode marker, and sorted into 2225 Molecular Operational Taxonomic Units (using Barcode Index Numbers: BINs) representing 68 families and 1216 named species. Eighty-five species shared a BIN with another species, 143 species were split across several BINs, and 990 species were assigned to a unique BIN, including 129 BINs new to the Barcode of Life Data System. The intraspecific and nearest neighbour distances varied across families, but most species can be easily distinguished from their nearest neighbours. By combining molecular data with taxonomic expertise, the barcode library provides species-level information for 12608 specimens, supplying future researchers with detailed taxonomic information and the opportunity to perform barcode-based specimen identifications for large-scale studies through sequence matching. Comparison of the Diptera composition of Churchill to other subarctic regions reflected likely postglacial colonization northwards as well as a Beringian and circumpolar component. This study also provides an initial investigation of molecular evolution in the best-represented species and finds variability in the rate of molecular evolution, opening intriguing avenues for further investigation. This study provides a publicly available, detailed reference library for use in future research, as well as new insights into the current diversity and taxonomic composition of Diptera present among the diverse habitats of Churchill.

molecular biology↗

bioRxiv2022

Chondroitin sulfates enhances the barrier function of basement membrane assembled by heparan sulfates

Glycosaminoglycans (GAGs) are ubiquitously expressed polysaccharides attached to proteoglycans, but their functions in the retina are poorly understood. Here we generated conditional knockouts of biosynthetic enzymes for heparan sulfate (HS) and chondroitin sulfate (CS) in retinal progenitor cells. We showed that ablation of HS polymerase Ext1 did not affect initial progression of retinal angiogenesis, but it disrupted the pruning of blood vessels and establishment of arterioles and venules. In the absence of retinal HS, blood vessels were also vulnerable to high oxygen tension in early postnatal stages, which can be rescued by exogenous VEGF, consistent with the role of retinal HS in the fine-tuning of VEGF signaling. Furthermore, we observed that the retinal inner limiting membrane (ILM) was disrupted by deletion of Ext1 in a timing specific manner, suggesting that retinal HS is required for the assembly but not the maintenance of the ILM. Lastly, we showed that further deletion of C4st1, a CS sulfation enzyme, did not affect the assembly of the ILM, but aggravated the ILM permeability when combined with Ext1 deletion. These results demonstrated an important role of CS and HS in establishing the barrier function of basement membrane.

developmental biology↗

bioRxiv2020

The environmental impacts of palm oil and its alternatives

The destruction of ecosystems for vegetable oil production represents a major cause of global biodiversity loss and greenhouse gas emissions 1. Over the last two decades, oil palm, in particular, has caused societal concern due to its high impacts on biodiverse and carbon-dense tropical rainforests 2-8, leading to calls to source vegetable oils from alternative oil-producing crops. However, given the high yields of oil palm, how does that damage compare with other oil crops that require more land? Here, we estimate the carbon and biodiversity footprints, per unit of oil produced, of the worlds five major vegetable oil crops. We find that oil palm has the lowest carbon loss and species richness loss per-tonne-oil, but has a larger impact on range-restricted species than sunflower and rapeseed. We go on to identify global areas for oil crop expansion that will minimise future carbon and biodiversity impacts, and argue that closing current yield gaps and optimising the location of future growing areas will be much more effective at reducing future environmental impacts of global vegetable oil production than substituting any one crop for another.

ecology↗