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Biology subjects

Brake, D.

Publications and source records attributed to Brake, D..

2 recordsLinked to original sources

High-Throughput and Accurate 3D Scanning of Cattle Using Time-of-Flight Sensors and Deep Learning

We introduce a high throughput 3D scanning solution specifically designed to precisely measure cattle phenotypes. This scanner leverages an array of depth sensors, i.e. time-of-flight (Tof) sensors, each governed by dedicated embedded devices. The system excels at generating high-fidelity 3D point clouds, thus facilitating an accurate mesh that faithfully reconstructs the cattle geometry on the fly. In order to evaluate the performance of our system, we have implemented a two-fold validation process. Initially, we test the scanners competency in determining volume and surface area measurements within a controlled environment featuring known objects. Secondly, we explore the impact and necessity of multi-device synchronization when operating a series of time-of-flight sensors. Based on the experimental results, the proposed system is capable of producing high-quality meshes of untamed cattle for livestock studies.

bioengineering↗

Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

In North America, antibiotic feed additives such as monensin and tylosin are added to the finishing diets of feedlot cattle to counter the ill-effects of feeding diets with rapidly digestible carbohydrates. While these feed additives have been proven to improve feed efficiency, and reduce liver abscess incidence, how these products impact the gastrointestinal microbiota is not completely understood. Furthermore, there are concerns that antibiotic feed additives may expand the antibiotic resistome of feedlot cattle by enriching antimicrobial resistance genes in pathogenic and nonpathogenic bacteria in the gut microbiota. In this study, we analyzed the impact of providing antibiotic feed additives to feedlot cattle using metagenome sequencing of treated and untreated animals. Our results indicate that use of antibiotic feed additives does not produce discernable changes at the phylum level however treated cattle had reduced the abundance of gram-positive bacteria at the genus level. The abundance of Ruminococcus, Erysipelotrichaceae and Lachanospira in the gut of treated steers was reduced. This may impact the ability of these animals to exclude pathogens from the gut. However, our results did not show any correlation between the presence of antimicrobial resistance genes in the gut microbiota and the administration of antibiotic feed additives.

microbiology↗