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Bottino, D.

Publications and source records attributed to Bottino, D..

3 recordsLinked to original sources

A Generalization of the Ternary Binding Model to Membrane-Confined Systems with Finite Copy Number

Bispecific T cell engagers and related immunotherapies are dosed using equilibrium binding models derived for well-mixed solution, yet therapeutic activity occurs at nanoscale membrane synapses with finite receptor copy numbers. Here we show that membrane confinement introduces geometry-dependent corrections to the landmark Douglass [6] ternary binding model, shifting formation half-points (TF50) by 2-10-fold at clinically relevant antigen densities. We present two complementary formulations--effective concentration and surface density--that preserve the Douglass framework while explicitly accounting for synapse geometry, surface topology, and the accessibility factor () of surface receptors. We further derive stochastic descriptions of trimer formation via the chemical master equation, demonstrating the recovery of the classical Ternary Binding Model equilibrium in appropriate limits. We illustrate the framework using the CD19-targeting BiTE blinatumomab as a case study. Accounting for microvillus-driven patchy close contact during immune surveillance yields a mechanistic explanation for why higher target antigen density can increase the dose required to achieve a fixed level of ternary formation: in the membrane-confined regime, excess target acts as a local antigen sink that sequesters drug and reduces the free fraction available for productive bridging. Rather than fitting to a single shift value, we emphasize the robust scaling and regime structure predicted by the theory (density-proportional behavior in the sink-dominated limit, and collapse toward affinity-limited behavior outside that limit). The generalized framework provides ready-to-use correction formulas and parameter-estimation guidance, establishing a rigorous foundation for antigen-density-aware dosing strategies in T cell engager pharmacology. Statement of SignificanceBispecific T cell engagers are currently interpreted largely through bulk-solution binding models, but at nanometer-scale immune synapses those models can miss a distinct, decision-relevant regime. We generalize the standard ternary binding model to membrane-confined synapses and relate whole-cell receptor counts to effective concentrations in the contact zone. In a blinatumomab case study, the framework explains a paradoxical observation: increasing target density can shift half-maximal ternary-complex formation to higher doses because abundant antigen acts as a local sink that sequesters drug. These results show when bulk affinity alone is insufficient for potency interpretation and support antigen-density-aware dosing and experiments that distinguish geometric from chemical control.

biophysics↗

Using mixed-effects modeling to estimate decay kinetics of response to SARS-CoV-2 infection

The duration of natural immunity in response to SARS-CoV-2 is a matter of some debate in the literature at present. For example, in a recent publication characterizing SARS-CoV-2 immunity over time, the authors fit pooled longitudinal data, using fitted slopes to infer the duration of SARS-CoV-2 immunity. In fact, such approaches can lead to misleading conclusions as a result of statistical model-fitting artifacts. To exemplify this phenomenon, we reanalyzed one of the markers (pseudovirus neutralizing titer) in the publication, using mixed-effects modeling, a methodology better suited to longitudinal datasets like these. Our findings showed that the half-life was both longer and more variable than reported by the authors. The example selected by us here illustrates the utility of mixed-effects modeling in provide more accurate estimates of the duration and heterogeneity of half-lives of molecular and cellular biomarkers of SARS-CoV-2 immunity.

immunology↗

Effects of moderate and high intensity isocaloric aerobic training upon microvascular reactivity and myocardial oxidative stress in rats

Systemic and central cardiovascular adaptations may vary in response to chronic exercise performed with different intensities and volumes. This study compared the effects of aerobic training with different intensities but equivalent volume upon microvascular reactivity in cremaster muscle and myocardial biomarkers of oxidative stress in Wistar rats. After peak oxygen uptake (VO2peak) assessment, rats (n=24) were assigned into three groups: moderate-intensity exercise training (MI); high-intensity exercise training (HI); sedentary control (SC). Treadmill training occurred during 4 weeks, with exercise bouts matched by the energy expenditure (3.0-3.5 Kcal). Microvascular reactivity was assessed in vivo by intravital microscopy in cremaster muscle arterioles, while biomarkers of oxidative stress and eNOS expression were quantified at left ventricle and at aorta, respectively. Similar increasing vs. sedentary control group (SC) occurred in moderate intensity training group (MI) and high-intensity training group (HI) for endothelium-dependent vasodilation (10-4M: MI: 168.7%, HI: 164.6% vs. SC: 146.6%, P=0.0004). Superoxide dismutase (SOD) (HI: 0.13 U/mg vs. MI: 0.09 U/mg and SC: 0.06 U/mg; P=0.02), glutathione peroxidase (GPX) (HI: 0.00038 U/mg vs. MI: 0.00034 U/mg and SC: 0.00024 U/mg; P=0.04), and carbonyl protein content (HI: 0.04 U/mg vs. MI: 0.03 U/mg and SC: 0.01 U/mg; P=0.003) increased only in HI. No difference across groups was detected for catalase (CAT) (P=0.12), Thiobarbituric acid reactive substances (TBARS) (P = 0.38) or eNOS expression in aorta (P=0.44). In conclusion, higher exercise intensity induced greater improvements in myocardium antioxidant defenses, while gains in microvascular reactivity appeared to rely more on exercise volume than intensity.

physiology↗