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Biology subjects

Birand, A.

Publications and source records attributed to Birand, A..

3 recordsLinked to original sources
bioRxiv2025

The LAST mile: Evaluating genetic biocontrol as a supplemental tool for eradicating invasive rodents on islands

Invasive rodents cause severe ecosystem degradation on islands and can be challenging to eradicate. Current best-practices rely heavily on the application of toxic oral baits and have led to successful eradications and remarkable recoveries of native flora and fauna. Yet this single method is not universally applicable. Reliance on a single method limits further eradication success in situations where toxicants cannot be used or remnant populations persist after application. Genetic biocontrol offers a suite of new solutions to potentially improve outcomes in the critical "last mile" of eradication. These approaches involve the release of genetically modified individuals of the target species to reduce population fitness over time. These include self-limiting approaches which require multiple releases and self-sustaining mechanisms (i.e., select gene-drive systems) which could theoretically collapse populations after a single release. While gene drive systems have received significant attention, their development in vertebrates remains technically challenging, and their ecological and regulatory implications are still in active debate. In contrast, some non-drive genetic biocontrol approaches, such as Y-linked editors, fsRIDL, and Gravid Lethal, offer self-limiting alternatives that may be more immediately deployable. These approaches could be used to supplement toxicant-based methods and may also have reduced environmental risks and regulatory barriers. To evaluate the potential of these tools, we developed an individual-based model simulating the eradication of house mice (Mus musculus) on a 125ha island with an initial population of 11,000 individuals. We tested various combinations of genetic biocontrol release and effort strategies to understand tradeoffs between required effort and uncertainty for achieving successful eradication. Under certain effort strategies, we found that the Gravid Lethal approach performed the best, achieving eradication in less than 2.3 years with intensive release effort and monitoring. Our findings suggest that integrating non-drive genetic biocontrol into adaptive management frameworks could enhance the effectiveness and feasibility of rodent eradication programs. These tools are not replacements for toxicants but may serve as critical supplements--particularly in the "last mile" of eradication. Further stakeholder engagement is needed to assess the ecological, ethical, and logistical dimensions of deploying these technologies in real-world settings.

ecology↗
bioRxiv2022

Leveraging a natural murine meiotic drive to suppress invasive populations

Invasive rodents, including house mice, are a major cause of environmental damage and biodiversity loss, particularly in island ecosystems. Eradication can be achieved through the distribution of rodenticide, but this approach is expensive to apply at scale, can have negative impacts (e.g. on non-target species, or through contamination), has animal ethics concerns, and has restrictions on where it can be used. Gene drives, which exhibit biased inheritance, have been proposed as a next generation strategy to control invasive alien pests and disease vectors. However, synthetic gene drives including CRISPR homing drives have proven to be technically challenging to develop in mice. The t haplotype is a naturally-occurring segregation distortion locus with highly biased transmission from heterozygous males. Here we propose a novel gene drive strategy for population suppression, tCRISPR, that leverages t haplotype bias and an embedded SpCas9/gRNA transgene to spread inactivating mutations in a haplosufficient female fertility gene. Using spatially explicit individual-based in silico modelling, we show that polyandry, sperm competition, dispersal, and transmission bias are critical factors for tCRISPR-mediated population suppression. Modelling of realistic parameter values indicates that tCRISPR can eradicate an island population of 200,000 mice while the unmodified t haplotype fails under the same conditions. We also demonstrate feasibility of this approach by engineering tCRISPR mice in a safe split drive format. tCRISPR mice exhibit high transmission of the modified t haplotype, and efficient generation and transmission of inactivating mutations in a recessive female fertility gene, crucially, at levels for which the modelling predicts that population eradication can occur. This is the first example of a feasible gene drive system for invasive alien rodent population control.

genetics↗
bioRxiv2017

Archaeogenetics of Late Iron Age Cemialo Sırtı, Batman: Investigating maternal genetic continuity in North Mesopotamia since the Neolithic

North Mesopotamia has witnessed dramatic political and social change since the Bronze Age, but the impact of these events on its demographic history is little understood. Here we study this question by analysing the recently excavated Late Iron Age settlement of Cemialo Srt in Batman, southeast Turkey. Archaeological and/or radiocarbon evidence indicate that the site was inhabited during two main periods: the first half of the 2nd millennium BCE and the first millennium BCE. Cemialo Srt reveals nomadic items of the Early Iron Age, as well as items associated with the Late Achaemenid and subsequent Hellenistic Periods. Mitochondrial DNA (mtDNA) haplotypes from 12 Cemialo Srt individuals reveal high genetic diversity in this population, conspicuously higher than early Holocene west Eurasian populations, which supports the notion of increasing population admixture in west Eurasia through the Holocene. Still, in its mtDNA composition, Cemialo Srt shows highest affinity to Neolithic north Syria and Neolithic Anatolia among ancient populations studied, and to modern-day southwest Asian populations. Population genetic simulations do not reject continuity between Neolithic and Iron Age, nor between Iron Age and present-day populations of the region. Despite the regions complex political history and indication for increased genetic diversity over time, we find no evidence for sharp shifts in north Mesopotamian maternal genetic composition within the last 10,000 years.

evolutionary biology↗