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Biology subjects

Biran, H.

Publications and source records attributed to Biran, H..

2 recordsLinked to original sources

The Unexpected Match: STAT3-NORAD Interaction, a Novel Link in Antiviral Defense

In the intricate biological landscape, evolution often repurposes familiar elements for novel roles. This study reveals an interaction between the long non-coding RNA NORAD, noted for its role in DNA stability, and the immune-related transcription factor STAT3. Our findings indicate that NORADs binding to STAT3 facilitates its nuclear entry, suppressing the antiviral response. In the absence of NORAD, STAT3 remains cytoplasmic, enabling STAT1 to activate this response. Evidence from viral infections and clinical samples reinforces this unique role for NORAD. Intriguingly, while other functions of NORAD are conserved in evolution, this newly discovered role is unique to humans, owing to the introduction of an ALU element in hominoids. This discovery sheds new light on the evolution of antiviral defenses.

molecular biology↗

SPIRAL: Significant Process InfeRence ALgorithm for single cell RNA-sequencing and spatial transcriptomics

1Gene expression data is complex and may hold information regarding multiple biological processes at once. We present SPIRAL, an algorithm that uses a Gaussian statistical model to produce a comprehensive overview of a plurality of significant processes detected in single cell RNA-seq or spatial transcriptomics data. SPIRAL identifies biological processes by finding sub-matrices that consist of the subset of genes involved and the subset of cells or spots. We describe the algorithmic method, the analysis pipeline and several example results. SPIRAL is available at https://spiral.technion.ac.il/.

bioinformatics↗