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Biolatti, L. V.

Publications and source records attributed to Biolatti, L. V..

2 recordsLinked to original sources

Development of a Multidose Irradiation Protocol for Clonogenic Assays in Cell Culture Plates

PurposeIn vitro experimental radiobiology is a fundamental tool for understanding the cellular and molecular mechanisms involved in the response to ionizing radiation. Conventional experimental designs require separate irradiations to achieve different absorbed doses, thereby introducing experimental variability between irradiation sessions due to inter-session variability in both culture conditions and irradiation geometry. Here, we developed a multidose irradiation system for multiwell cell culture plates that enables the simultaneous delivery of three distinct dose levels within a single plate, thereby reducing resource consumption and operating time MethodsThe system was designed using a clinical linear accelerator delivering 6 MV X-rays and a 3D conformal irradiation approach based on CT imaging. Dose calculations for 200, 400 and 600 cGy were performed using Monaco Version 5.11. The irradiation geometry was optimized to achieve distinct and well-separated dose regions while preserving dose uniformity within each dose level. Treatment planning showed good agreement between estimated and prescribed dose levels, with mean dose deviation ranging from 0.35-1.63%. Physical verification using TLDs and radiochromic films demonstrated high dosimetric accuracy, showing deviations of 0.5-1.0% and 0.57-3.0%, respectively, expressed as the deviation of the measured mean dose from the nominal administered dose levels. Biological assessment included clonogenic assays in human tumor cell lines and a metabolic assay. Clonogenic assays showed a high concordance between the multidose and single-dose irradiation, with comparable linear-quadratic model fits (extra sum-of-squares F-test, p = 0.0923), confirming preservation of the intrinsic radiobiological response under simultaneous irradiation. ConclusionsThese results support the reliability of the proposed multidose irradiation system for in vitro radiobiology. This robust and reproducible system enables efficient characterization of radiobiological parameters.

cell biology↗

Whole-genome pre-amplification as a viable approach for genomic screening of FFPE-derived DNA samples

Whole-genome sequencing (WGS) enables comprehensive analysis of tumour genomes, but its use in formalin-fixed paraffin-embedded (FFPE) samples is limited by DNA fragmentation and low yields. Whole-genome amplification (WGA) methods such as multiple displacement amplification (MDA) can boost DNA availability but distort copy-number alteration (CNA) profiles. DNA ligation-mediated MDA (DLMDA) mitigates this bias by reconstituting fragmented templates, yet its performance in FFPE-derived DNA remains uncertain. We compared paired DLMDA pre-amplified (2h, 8h) and non-pre-amplified FFPE prostate tumour samples from 22 archival blocks (5, 15 and 20 years old). DLMDA increased DNA yield by 42- to 86-fold, with global CNA patterns largely preserved. However, DLMDA significantly reduced the number of detected CNA deletions and amplifications. These effects were independent of both block age and reaction time. CNA dropouts were randomly distributed across the genome, indicating that DLMDA does not introduce regional bias. Our results show that DLMDA enables robust DNA yield recovery and avoids false-positive CNA artefacts, but at the cost of reduced CNA sensitivity. While suitable for CNA screening pipelines through WGS, further improvements are required to minimise the false-negative risk and improve the techniques sensitivity for FFPE-based genomics.

molecular biology↗