Biology subjects

Bianchini, G.

Publications and source records attributed to Bianchini, G..

6 recordsLinked to original sources

bioRxiv2026

CDKL5 phosphorylates neuronal ELAVL proteins to promote mRNA binding, protein synthesis and visual cortex development

Loss-of-function mutations in the X-linked CDKL5 gene lead to a severe neurodevelopmental disorder characterized by early-onset epilepsy, known as CDKL5 Deficiency Disorder (CDD). Despite its clinical significance, the physiological substrates of the serine/threonine kinase CDKL5 and its roles in neuronal development remain poorly understood. To address this, we performed quantitative phosphoproteomics analysis in Cdkl5 knockout (KO) mouse brains, identifying 22 CDKL5 substrates involved in diverse cellular functions. Among these, we focused on the neuronal RNA-binding proteins (nELAVLs) ELAVL2, ELAVL3, and ELAVL4, as these represented the only evolutionarily conserved phosphorylation and are known regulators of neuronal differentiation. Through kinase assays and individual-nucleotide resolution crosslinking and immunoprecipitation (iCLIP), we found that CDKL5 phosphorylates S119/131 in ELAVL2/3/4, promoting their cytoplasmic localization and enhancing their binding to target mRNAs at 3UTRs. Loss of CDKL5 activity in neurons caused reduced new protein synthesis, as measured by puromycin incorporation; this phenotype was rescued by knockdown of the nELAVL inhibitor long non-coding RNA, RNY3, revealing an essential function of CDKL5 in enhancing protein synthesis via nELAVL phosphorylation. To investigate the in vivo functions of nELAVL phosphorylations, we generated Elavl2/3/4 phosphomutant mice and found that collectively nELAVL phosphorylations are required for viability. Proteomic and transcriptomic analyses of Elavl2/3 homozygous phosphomutants, which exhibited sub-viability, revealed compensatory upregulation of ELAVL4 and synaptic proteins. Functionally, in Elavl2/3/4 triple heterozygous mice Neuropixels recordings in the primary visual cortex showed deficits in receptive field properties and orientation tuning, revealing the role of nELAVL phosphorylation for accurate cortical circuit formation. Our study uncovers a crucial role for CDKL5 in regulating nELAVL-mediated protein synthesis and the development of cortical circuits.

neuroscience↗

bioRxiv2025

Evolution of the olfactory system during the radiation of Heliconiini butterflies

Sensory system evolution plays a crucial role in shaping species interactions with their environment, yet the extent to which olfactory system diversity reflects ecological and evolutionary pressures at a macroevolutionary scale remains unclear. Here, we investigate the evolution of the olfactory system across the Heliconiini butterfly tribe, an ecologically diverse but closely related group. Using a comparative approach, we examined variation in antennal lobe morphology and its constituent structures, the glomeruli and antennal lobe hub, as well as olfactory receptor repertoires across species. We found that antennal lobe size variation is driven by independent shifts in glomerular and antennal lobe hub volumes, with species-specific differences occurring against a backdrop of broader phylogenetic stability. While no direct associations with ecological traits were observed, certain species showed large expansions in total glomerular volume and olfactory receptor numbers, warranting further investigation into unmeasured ecological or behavioural factors. Additionally, comparisons between wild-caught and insectary-reared individuals revealed a surprising pattern of developmental plasticity, with antennal lobe hub volumes increasing and glomeruli volumes decreasing in captivity, highlighting the influence of environmental conditions on neural development. These findings suggest that olfactory evolution in Heliconiini is shaped by both evolutionary divergence and developmental plasticity, emphasizing the need to integrate phylogenetic, ecological, and developmental perspectives to fully understand sensory system adaptation.

evolutionary biology↗

bioRxiv2025

PhotoNeuro: A compact photodetector for synchronization of visual stimulus presentation during behavioral experiments in neuroscience.

Presenting visual stimuli in neuroscience experiments often requires the combination of analogue signals that carry information about the visual cue presented on the LCD display. Such signals are often sensed by photodetectors and recorded in analogue to digital converter (ADC) acquisition boards. The use of open-source visual programming languages such as Bonsai is becoming more and more popular. They are often used in combination with other open-source hardware such as Arduino development boards. These microcontroller-based boards can be used to automate behavioural experiments: e.g., actuate valves and motors and acquire analogue signals on their ADC channels. LCDs and other modern display allow fast presentation of arbitrary visual stimuli and are widely used for psychophysics and neuroscience experiments. However, most displays do not provide hardware timestamping options and are intrinsically nonlinear. Solving this limitation often requires a direct recording of the light emitted by the display with a photodiode. Such photodetectors are are often amplified at higher voltages and hard to integrate in most common recording systems that use microcontrollers. The other drawback commonly found by neuroscience researchers in commercial devices is the relatively big footprint that the sensor occupies on the screen which, ideally should be minimised so not to interfere with the stimuli presentation. In this paper we present a small footprint photodetector that can be easily replicated and operates at 5V making it suitable to use with common development boards and the visual programming language Bonsai that is commonly used for experiment creation and control. Additionally, we share a version that includes four photodiodes in small area (400 mm2). Specifications table O_TBL View this table: org.highwire.dtl.DTLVardef@7bafcforg.highwire.dtl.DTLVardef@5353ccorg.highwire.dtl.DTLVardef@a29f47org.highwire.dtl.DTLVardef@86f5d2org.highwire.dtl.DTLVardef@74da5f_HPS_FORMAT_FIGEXP M_TBL C_TBL

neuroscience↗

bioRxiv2025

Functional specialisation of multisensory temporal integration in the mouse superior colliculus

Our perception of the world depends on the brains ability to integrate information from multiple senses, with temporal disparities providing a critical cue for binding or segregating cross-modal signals1,2. The superior colliculus (SC) is a key site for integrating sensory modalities, but how cellular and network mechanisms in distinct anatomical regions within the SC contribute to multisensory integration remains poorly understood. Here, we recorded responses from over 5,000 neurons across the SCs anatomical axes of awake mice during presentations of spatially coincident audiovisual stimuli with varying temporal asynchronies. Our findings revealed that multisensory neurons reliably encoded audiovisual delays and exhibited nonlinear summation of auditory and visual inputs, with nonlinearities being more pronounced when visual stimuli preceded auditory stimuli, consistent with the natural statistics of light and sound propagation. Nonlinear summation was crucial for population-level decoding accuracy and precision of AV delay representation. Moreover, enhanced population decoding of audiovisual delays in the posterior-medial SC, facilitated temporal discriminability in the peripheral visual field. Cross-correlation analysis indicated higher connectivity in the medial SC and functional specific recurrent connectivity, with visual, auditory, and multisensory neurons preferentially connecting to other neurons of the same functional subclass, and multisensory neurons receiving approximately 50 percent of the total local input from other multisensory neurons. Our results highlight the interplay between single-neuron computations, network connectivity, and population coding in the SC, where nonlinear integration, distributed representations and regional functional specialisations enables robust sensory binding and supports the accurate encoding of temporal multisensory information. Our study provides new insights into how the brain leverages both single-neuron and network-level mechanisms to represent sensory features by adapting to the statistics of the natural world.

neuroscience↗

bioRxiv2024

Vasopressin differentially modulates the excitability of rat olfactory bulb neuron subtypes

Vasopressin (VP) is essential for social memory already at the level of the olfactory bulb (OB), and OB VP cells are activated by social interaction. However, it remains unclear how VP modulates olfactory processing to enable enhanced discrimination of very similar odors, e.g., rat body odors. So far, it has been shown that VP reduces firing rates in mitral cells (MCs) during odor presentation in-vivo and decreases the amplitudes of olfactory nerve-evoked excitatory postsynaptic potentials (ON-evoked EPSPs) in external tufted cells in-vitro. We performed whole-cell patch-clamp recordings and population Ca2+ imaging on acute rat OB slices. We recorded ON-evoked EPSPs as well as spontaneous inhibitory postsynaptic currents (IPSCs) from two types of projection neurons, middle tufted cells (mTCs) and MCs. VP bath-application reduced the amplitudes of ON-evoked EPSPs and the frequencies of spontaneous IPSCs in mTCs but did not change those in MCs. Therefore, we analyzed ON evoked-EPSPs in inhibitory interneurons, i.e., periglomerular cells (PGCs) and granule cells (GCs), to search for the origin of increased inhibition in mTCs. However, VP did not increase the amplitudes of evoked EPSPs in either type of interneurons. We next performed two-photon population Ca2+ imaging in the glomerular layer and the superficial GC layer of responses to stronger ON stimulation than during patch-clamp experiments that should evoke action potentials in the measured cells. We observed that VP application increased ON-evoked Ca2+ influx in juxtaglomerular cell and GC somata and decreased it in the intraglomerular neuropil. Thus, our findings indicate inhibition by VP on projection neurons via strong ON input-mediated inhibitory interneuron activity.

neuroscience↗

bioRxiv2024

Development and validation of a gene expression score to account for tumour purity and improve prognostication in breast cancer

The prevalence of malignant cells in clinical specimens, or tumour purity, is affected by both intrinsic biological factors and extrinsic sampling bias. Molecular characterization of large clinical cohorts is typically performed on bulk samples; data analysis and interpretation can be biased by tumour purity variability. Transcription-based strategies to estimate tumour purity have been proposed, but no breast cancer specific method is available yet. We interrogated over 4400 expression profiles from 9 breast cancer datasets to develop and validate a 9-gene Breast Cancer Purity Score (BCPS). BCPS outperformed existing methods for estimating tumour content. Adjusting transcriptomic profiles using the BCPS reduce sampling bias and aid data interpretation. BCPS-estimated tumour purity improved prognostication in luminal breast cancer, correlated with pathologic complete response in on-treatment biopsies from triple-negative breast cancer patients undergoing neoadjuvant treatment and effectively stratified the risk of relapse in HER2+ residual disease post-neoadjuvant treatment.

bioinformatics↗