Search bioRxiv⌕ Search

Biology subjects

Bhojappa, B.

Publications and source records attributed to Bhojappa, B..

2 recordsLinked to original sources

Nim1-related kinases regulate septin organization and cytokinesis by modulating Hof1 at the cell division site

The septin scaffold recruits and organizes actomyosin ring (AMR) components, thus, ensuring faithful cytokinesis. The septin-associated kinases - Elm1, Gin4, Hsl1, and Kcc4 are thought to stabilize and regulate the septin architecture at the bud neck, but the underlying mechanisms remain largely unknown. Here, we present a comprehensive, quantitative analysis of these four septin-associated kinases and reveal major roles for Elm1 and Gin4 in septin stability and architectural transitions during the cell cycle. We find that Elm1 and Gin4 play a previously overlooked role in AMR organization and constriction during cytokinesis. We report that the Gin4 kinase interacts directly with the AMR component and F-BAR protein Hof1 via its C-terminal membrane-binding kinase associated-1 (KA1) domain, and is likely involved in the proper organization and anchoring of Hof1 at the bud neck, representing an unappreciated mode of regulation during cytokinesis. We further show that Gin4 controls septin organization and AMR constriction in a kinase-independent manner, similar to Elm1. Using an extensive GFP-GBP-based tethering assay in elm1{Delta} and gin4{Delta} cells, we identify an important role for Hsl1 in maintaining septin organization and cell shape in coordination with Elm1, Gin4, and Kcc4, independent of its role in the morphogenetic checkpoint. Furthermore, our data indicate that Hsl1 acts downstream of Elm1, with its membrane-binding KA1 domain being critical for its function. Together, these findings reveal new insights into the modes by which the kinases Gin4 and Elm1 regulate cytokinesis, highlight a redundant role for Hsl1 in controlling septin organization and cytokinesis, and uncover the inherent redundancy and adaptability of the septin kinase network in Saccharomyces cerevisiae.

cell biology↗

ALIBY: ALFA Nanobody-Based Toolkit for Imaging and Biochemistry in Yeast

Specialized epitope tags continue to be an integral component in various biochemical and cell biological applications such as fluorescence microscopy, immunoblotting, immunoprecipitation, and protein purification. However, until recently, no single tag could offer this complete set of functionalities on its own. Here, we present a plasmid-based toolkit named ALIBY (ALFA Toolkit for Imaging and Biochemistry in Yeast) that provides a universal workflow to adopt the versatile ALFA tag/NbALFA system within the well-established model organism Saccharomyces cerevisiae. The kit comprises of tagging plasmids for labelling a protein-of-interest with the ALFA tag, and detection plasmids encoding a fluorescent protein-tagged NbALFA for live-cell imaging purposes. We demonstrate the suitability of ALIBY for visualizing the spatiotemporal localization of yeast proteins (i.e., cytoskeleton, nucleus, centrosome, divisome and exocyst) in live cells. Our approach has yielded an excellent signal-to-noise ratio without off-targeting or effect on cell growth. In summary, our yeast-specific toolkit aims to simplify and further advance the live-cell imaging of differentially abundant yeast proteins while also being suitable for biochemical applications. ImportanceIn yeast research, conventional fluorescent protein tags and small epitope tags are widely used to study the spatiotemporal dynamics and activity of proteins. Though proven to be efficient, these tags lack the versatility for usage across different cell biological and biochemical studies of a given protein-of-interest. Therefore, there is an urgent need for a unified platform for visualization, biochemical, and functional analyses of proteins-of-interest in yeast. Herein, we have engineered ALIBY, a plasmid-based toolkit which expands the benefits of the recently developed ALFA tag/NbALFA system to studies in the well-established model organism Saccharomyces cerevisiae. We demonstrate that ALIBY provides a simple and versatile strain construction workflow for long duration live-cell imaging and biochemical applications in yeast.

cell biology↗