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Biology subjects

Bhattacharyya, B.

Publications and source records attributed to Bhattacharyya, B..

2 recordsLinked to original sources

Multiple roles for TFG ring complexes in neuronal cargo trafficking

Pathological variants in Trk-fused gene (TFG) have been implicated in a variety of neurodegenerative conditions. In particular, mutations within its amino-terminal PB1 domain have been suggested to cause hereditary spastic paraplegia (HSP), resulting in progressive lower limb spasticity and weakness. The structural basis for this effect is unknown. Here, we combine X-ray crystallography and cryo-electron microscopy to determine a structural model of TFG, demonstrating the mechanism by which it forms octameric ring complexes. A network of electrostatic and hydrophobic interactions defines the interface between protomers. Moreover, we show that mutations identified previously in HSP patients disrupt this interface, destabilizing octamers, which ultimately leads to axonopathy. Surprisingly, the impacts of these variants are not equivalent in vivo, highlighting the existence of multiple, distinct mechanisms by which TFG mutations contribute to neurodegenerative disease.

biochemistry↗

Stochastic Epigenetic Dynamics of Gene Switching

Epigenetic modifications of histones crucially affect the eukaryotic gene activity. We theoretically analyze the dynamical effects of histone modifications on gene switching by using the Doi-Peliti operator formalism of chemical reaction kinetics. The calculated probability flux in self-regulating genes shows a distinct circular flow around basins in the landscape of the gene state distribution, giving rise to hysteresis in gene switching. In contrast to the general belief that the change in the amount of transcription factor (TF) precedes the histone state change, the flux drives histones to be modified prior to the change in the amount of TF in the self-regulating circuits. The flux-landscape analyses elucidate the nonlinear nonequilibrium mechanism of epigenetic gene switching.

biophysics↗