Search bioRxiv⌕ Search

Biology subjects

Bharti, M.

Publications and source records attributed to Bharti, M..

2 recordsLinked to original sources

Human ERG Oncoprotein Represses Chip/LDB1 LIM-Domain Binding Gene in Drosophila

ERG oncoprotein, a master transcription factor, targets diverse arrays of genes in different cancers. Identifying oncogenically relevant ones from these ERG targets, however, is challenging. Here we show that heterologous ERG disrupts a LIM-homeodomain (LIM-HD) complex, Chip-Tailup, in Drosophila. In the posterior thorax (notum) primordium, ERG-induced upregulation of E(z)/EZH2 trimethylates histones in Chip promoter. A consequent loss of the Chip-Tailup complex releases repression of N-Wg signaling in the notum, inducing de novo wings and, alternatively, carcinogenesis of ERG-expressing notal cells displaying loss of Lgl tumor suppressor. ERG-induced developmental or oncogenic fallouts are abrogated upon gain of Chip, N, or E(z) loss, besides Wg ligand sequestration. ERG-positive prostate cancer (PCa) cells, too, display suppression of mammalian homolog of Drosophila Chip, LIM Domain Binding1, LDB1. Deep homology in gene regulatory networks, like that of Chip-Tup complex, thus help prioritize identification of functionally relevant targets of human oncoproteins in Drosophila. HighlightsO_LIHuman ERG suppresses Chip, a LIM-domain binding, LDB gene in Drosophila via E(z) C_LIO_LIERG-mediated Chip loss induces ectopic Wg morphogen signaling in the notum primordium C_LIO_LIChip gain suppresses ERG-induced Wg morphogen and tumor progression in lgl clones C_LIO_LIERG-positive human PCa cell lines show downregulation of a Chip homolog, LDB1 C_LI In briefMammalian ERG oncoprotein displays a diverse and perplexing range of targets in different cancers. By driving ERG in Drosophila developing appendages, Bharti et al. reveal its repression of a LIM-domain coding gene, Chip/LDB1. ERG-positive prostate cancer cells, too, display Chip/LDB1 repression. Deep homology across phylogeny thus helps uncover oncoprotein targets.

developmental biology↗

Genome-resolved metagenomics reveals cohesive metabolic dynamics, metal resistance genes (MRGs) and biogeochemical cycling in a hot spring system

The hot spring microbiome is a complex assemblage of micro- and geochemistry of this spring have been and macro- organisms, however, the understanding and projection of enzymatic repertoire that access earths integral ecosystem processes remains limited. The composite microbial communities drive global carbon, sulfur, oxygen, iron and nitrogen cycles and other metabolic mechanism involved in heavy metal tolerance and degradation. Interestingly, the Khirganga hot spring microbiome displayed an astounding taxonomical diversity revealed by examination of 41 high and medium qualified metagenome-assembled genomes (MAGs) from at least 12 bacterial and 2 archaeal phyla. Over 1749 genes putatively involved in crucial metabolism of elements viz. nitrogen, phosphorous, sulfur and 598 genes encoding enzymes for metals resistance from cadmium, zinc, chromium, arsenic and copper. The MAGs also possess 229 biosynthetic gene clusters dominated by bacteriocins and terpenes could be exploited in medicinal industries. Their metabolic roles found to be altering linkages in biogeochemical cycles and explored a discerned rate of carbon fixation exclusively in archaeal member Methanospirillum hungatei. Higher Pfam entropy scores in Proteobacteria members highlighting their major contribution in sequestration of ammonia, nitrate and sulfate components as electron acceptors. Through these results, we could postulate that few novel organisms within the community can conduct multiple sequential redox conversions and also considered in reducing emergent difficulties of waste water treatment plants and biotechnological applications.

microbiology↗