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Bell-Pedersen, D.

Publications and source records attributed to Bell-Pedersen, D..

2 recordsLinked to original sources

Circadian clock control of translation fidelity through MetRS-mediated methionine misincorporation

Translation fidelity is generally viewed as a constitutive process that deteriorates under stress and aging. Here we show that the fidelity of amino acid incorporation is instead dynamically regulated by the circadian clock. In Neurospora crassa, methionine (Met) misincorporation into proteins exhibits robust daily rhythms, peaking at night coincident with elevated reactive oxygen species (ROS). Rhythmic Met misincorporation requires the circadian clock, the ERK-family MAPK MAK1, and MAK1-dependent phosphorylation of methionyl-tRNA synthetase (MetRS), linking circadian signaling to regulated mistranslation associated with oxidative stress resistance. Preventing MetRS phosphorylation abolishes rhythmic Met misincorporation, impairs growth, and increases sensitivity to oxidative stress, whereas a phosphomimetic MetRS mutant enhances oxidative stress survival. Proteome-wide analyses identified thousands of Met misincorporation events, including a rhythmic subset that oscillates independently of corresponding protein abundance, suggesting that mistranslation dynamically remodels proteome composition across the day. Together, these findings establish translation fidelity as a regulated circadian output and support a model in which the circadian clock temporally regulates mistranslation to enhance oxidative stress resilience. Significance StatementBiological clocks regulate translation termination fidelity, but whether they also control the accuracy of amino acid incorporation during protein synthesis was unknown. We show that the circadian clock drives rhythmic methionine misincorporation into proteins through ERK-family MAPK signaling and phosphorylation of methionyl-tRNA synthetase. Methionine misincorporation peaks during periods of elevated oxidative stress, and disrupting this regulation compromises oxidative stress survival, whereas constitutive activation enhances resistance. Together with previous work on translation termination fidelity, these findings reveal that biological clocks regulate multiple layers of translation fidelity and identify adaptive mistranslation as a mechanism that promotes cellular resilience.

molecular biology↗

Isoform-specific regulation of rhythmic gene expression by alternative polyadenylation

Alternative polyadenylation (APA) generates transcript isoforms with different 3 ends. Differences in polyadenylation sites usage, which have been associated with diseases like cancer, regulate mRNA stability, subcellular localization, and translation. By characterizing APA across the 24-hour day in mouse liver, here we show that rhythmic gene expression occurs largely in an APA isoform-specific manner, and that hundreds of arrhythmically expressed genes surprisingly exhibit a rhythmic APA isoform. The underlying mechanisms comprise isoform-specific post-transcriptional regulation, transcription factor driven expression of specific isoform, co-transcriptional recruitment of RNA binding proteins that regulate mRNA cleavage and polyadenylation, and, to a lesser extent, cell subtype-specific expression. Remarkably, rhythmic expression of specific APA isoforms generates 24-hour rhythms in 3 UTR length, with shorter UTRs in anticipation of the mouse active phase. Taken together, our findings demonstrate that cycling transcriptomes are regulated by APA, and suggest that APA strongly impacts the rhythmic regulation of biological functions.

molecular biology↗