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Bednar, J.

Publications and source records attributed to Bednar, J..

2 recordsLinked to original sources

Cuticular wax, but not the cutin matrix, is renewed during the lifespan of Clusia rosea leaves13CO2 labelling and gas exchange study

O_LIThe plant cuticle, which aided the water-to-land transition of plants, provides various services to the plant surface, and its synthesis and maintenance represent substantial metabolic costs. Nevertheless, only limited information regarding cuticle dynamics is available. C_LIO_LIWe determined the composition and dynamics of Clusia rosea cuticular waxes and matrix using 13CO2 labelling, compound-specific and bulk isotope ratio mass spectrometry. Collodion was used for wax collection; gas exchange techniques were employed to test for any collodion effects on living leaves. C_LIO_LICutin matrix (MX) area density did not vary between young and mature leaves and between leaf sides. Only young leaves incorporated new carbon into their MX. Collodion-based sampling discriminated between epicuticular (EW) and intracuticular wax (IW) effectively. EW differed in composition from IW. The newly synthetized wax was deposited in IW first and later in EW. Both young and mature leaves synthetized IW and EW; the faster dynamics in young leaves was not due to a faster synthesis rate but was the result of lower wax coverage. Longer-chain alkanes were deposited preferentially on the abaxial, stomatous leaf side, producing differences between leaf sides in wax composition. C_LIO_LIWe introduce a new, sensitive isotope labelling method and demonstrate that cuticular wax is renewed during leaf ontogeny of Clusia rosea. We discuss the ecophysiological significance of the new insights. C_LI

plant biology↗

Differential Histone-DNA Interactions Dictate Nucleosome Recognition of the Pioneer Transcription Factor Sox

Pioneer transcription factors (PTFs) have the remarkable ability to directly bind to chromatin for stimulating vital cellular processes. In this work, we dissect the universal binding mode of Sox PTF by combining extensive molecular simulations and DNA footprinting techniques. As a result, we show that when Sox consensus DNA is located at the solvent-facing DNA strand, Sox binds to the compact nucleosome without imposing any significant conformational changes. We also reveal that the basespecific Sox:DNA interactions (base reading) and the Sox-induced DNA changes (shape reading) are concurrently required for the sequence-specific DNA recognition. Among different nucleosomal positions, such a specific reading mechanism is satisfied solely at superhelical location 2 (SHL2). While SHL2 acts transparently to Sox binding, SHL4 permits only shape reading, and SHL0 (dyad) allows no reading mechanism. These findings demonstrate for the first time that Sox-based nucleosome recognition is essentially guided by the distinct histone-DNA interactions, permitting varying degrees of DNA flexibility.

biophysics↗