Search bioRxiv⌕ Search

Biology subjects

Beauchemin, K.

Publications and source records attributed to Beauchemin, K..

4 recordsLinked to original sources

A meta-analysis of 3-nitrooxypropanol effects on methane production and yield in beef cattle

Beef cattle are a major source of enteric methane (CH4) emissions, a potent greenhouse gas (GHG). The feed additive 3-nitrooxypropanol (3-NOP) has been shown to reduce CH4 emissions by inhibiting methyl-coenzyme M reductase, an enzyme critical to methanogenesis in archaea. This study aimed to quantify the effects of 3-NOP on CH4 production (g/d) and yield (g/kg DM intake; DMI) in beef cattle and to evaluate how diet composition influences the mitigation response. A systematic literature review identified 17 peer-reviewed in vivo studies, yielding 45 treatment means. Treatment effects were expressed as absolute and relative mean differences versus control groups. Predictor variables included 3-NOP dose, 3-NOP dose2, DMI, dietary concentration of NDF, CP, starch, fat, and organic matter (OM), roughage proportion, BW, and dietary inclusion of monensin (yes/no). Four types of models were developed, all including the intercept and 3-NOP dose as fixed predictors, differing as follows: (model 1) optional inclusion of 3-NOP dose2 when P < 0.10; (model 2) model 1 plus pre-inclusion of NDF concentration; (model 3) pre-inclusion of NDF concentration plus additional predictors (pairwise r [&le;] 0.5) that significantly improved model accuracy (P < 0.10); and (model 4) additional predictors selected under the same criteria as model 3, without pre-inclusion of NDF concentration. For models 3 and 4, a maximum of 5 predictors were considered and evaluated using leave-one-out cross-validation. Across studies, 3-NOP doses ranged from 32 to 338 mg/kg of DM. On average, 3-NOP reduced CH4 production by 49.9 {+/-} 28.61 g/d (36.2 {+/-} 24.42%) and CH4 yield by 5.3 {+/-} 3.61 g/kg DMI (33.2 {+/-} 25.54%). The best models were selected based on biological interpretability, statistical significance, and predictive accuracy (as measured by RMSE) and included 3-NOP dose, dietary NDF concentration, DMI, and BW as significant predictors (the latter two only for absolute CH4 production). Mitigation efficacy increased with higher DMI and declined with increasing NDF concentration and BW. Absolute reductions of 53.1 g/d and 5.88 g/kg of DMI, and relative reductions of 37.6% in CH4 production and 35.0% in CH4 yield were predicted when moderators were at their mean value (3-NOP dose = 134.4 mg/kg of DM; NDF concentration = 32.8% of DM; DMI of 8.6 kg/d). These results support the effectiveness of 3-NOP in mitigating enteric CH4 emission in beef cattle and provide quantitative models to be used in assessment tools and GHG inventory methodology. ImplicationsThe feed additive 3-nitrooxypropanol effectively reduces enteric methane emissions in beef cattle. This meta-analysis found average reductions of 36.2% in methane production and 33.2% in methane yield. Efficacy depended on diet composition; declining with increasing NDF concentration for both methane production (g/d) and yield (g/kg of DM intake; DMI). Greater DMI increased absolute methane production reduction but did not influence absolute methane yield reduction or relative reduction of both methane production and yield. These results support the targeted use of 3-nitrooxypropanol as a mitigation strategy and provide empirical models to inform greenhouse gas inventories and carbon accounting.

systems biology↗

Conformational switching of Arp5 subunit differentially regulates INO80 chromatin remodeling

The INO80 chromatin remodeler is a versatile enzyme capable of several functions, including spacing nucleosomes equal distances apart, precise positioning of nucleosomes based on DNA shape/sequence and exchanging histone dimers. Within INO80, the Arp5 subunit plays a central role in INO80 remodeling, evidenced by its interactions with the histone octamer, nucleosomal and extranucleosomal DNA, and its necessity in linking INO80s ATPase activity to nucleosome movement. Our investigation reveals that the grappler domain of Arp5 interacts with the acidic pocket of nucleosomes through two distinct mechanisms: an arginine anchor or a hydrophobic/acidic patch. These two modes of binding serve distinct functions within INO80 as shown in vivo by mutations in these regions resulting in varying phenotypes and in vitro by diverse effects on nucleosome mobilization. Our findings suggest that the hydrophobic/acidic patch of Arp5 is likely important for dimer exchange by INO80, while the arginine anchor is crucial for mobilizing nucleosomes.

biochemistry↗

PTEN and the PTEN-like phosphatase CnrN have both distinct and overlapping roles in a Dictyostelium chemorepulsion pathway

The directed movement of eukaryotic cells is crucial for processes such as embryogenesis and immune cell trafficking. The enzyme Phosphatase and tensin homolog (PTEN) dephosphorylates phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3] to phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2]. Dictyostelium discoideum cells require both PTEN and the PTEN-like phosphatase CnrN to locally inhibit Ras activation to induce biased movement of cells away from the secreted chemorepellent protein AprA. Both PTEN and CnrN decrease basal levels of PI(3,4,5)P3 and increase basal numbers of macropinosomes, and AprA prevents this increase. AprA requires both PTEN and CnrN to increase PI(4,5)P2 levels, decrease PI(3,4,5)P3 levels, inhibit proliferation, decrease myosin II phosphorylation, and increase filopod sizes. AprA causes PTEN, similar to CnrN, to localize to the side of the cell towards AprA in an AprA gradient. However, PTEN and CnrN also have distinct roles in some signaling pathways. PTEN, but not CnrN, decreases basal levels of PI(4,5)P2, AprA requires PTEN, but not CnrN, to induce cell roundness, and CnrN and PTEN have different effects on the number of filopods and pseudopods, and the sizes of filopods. Together, our results suggest that CnrN and PTEN play unique roles in D. discoideum signaling pathways, and possibly dephosphorylate PI(3,4,5)P3 in different membrane domains, to mediate chemorepulsion away from AprA.

cell biology↗

Comparative analysis of macroalgae supplementation on the rumen microbial community: Asparagopsis taxiformis inhibits major ruminal methanogenic, fibrolytic, and volatile fatty acid-producing microbes in vitro

1.Seaweeds have received a great deal of attention recently for their potential as methane-suppressing feed additives in ruminants. To date, Asparagopsis taxiformis has proven a potent enteric methane inhibitor, but it is a priority to identify local seaweed varieties that may hold similar properties. It is essential that any methane inhibitor does not compromise the function of the rumen microbiome. In this study, we conducted an in vitro experiment using the RUSITEC system to evaluate the impact of A. taxiformis, Palmaria mollis, and Mazzaella japonica on rumen prokaryotic communities. 16S rRNA sequencing showed that A. taxiformis had a profound effect on the microbiome, particularly on methanogens. Weighted Unifrac distances showed significant separation of A. taxiformis samples from the control and other seaweeds (P<0.05). Neither P. mollis nor M. japonica had a substantial effect on the microbiome (P>0.05). A. taxiformis reduced the abundance of all major archaeal species (P<0.05), leading to an almost total disappearance of the methanogens. Prominent fibre-degrading and volatile fatty acid (VFA)-producing bacteria including Fibrobacter and Ruminococcus were also inhibited by A. taxiformis (P<0.05), as were other genera involved in propionate production. However, the abundance of many other major bacteria (e.g. Prevotella) was increased by A. taxiformis suggesting the rumen microbiome adapted to an initial perturbation. Our study provides baseline knowledge of microbial dynamics in response to seaweed feeding over an extended period and suggests that feeding A. taxiformis to cattle to reduce methane may directly or indirectly inhibit important fibre-degrading and VFA-producing bacteria.

microbiology↗