Biology subjects

Bauer, C. C.

Publications and source records attributed to Bauer, C. C..

7 recordsLinked to original sources

bioRxiv2025

Non-duality in brain and experience of advanced meditators - Key role for Intrinsic Neural Timescales

Distinguishing between self (internal) and environment (external) is fundamental to human experience, with ordinary waking consciousness structured around this duality. However, contemplative traditions describe non-dual states where this distinction dissolves. Despite its significance, the neural basis of non-duality remains underexplored. Using psychological questionnaires for non-duality experience and EEG-based intrinsic neural timescales as measured by the autocorrelation window (ACW), we studied non-duality in advanced meditators, novice meditators, and controls. All subjects underwent breath-watching meditation (internal attention) and a visual oddball cognitive task (external attention); this allowed us to conceptualize non-duality as a lack of distinction between internal and external attention. Our key findings include: (a) advanced meditators report greater experience of non-duality during breath-watching (psychological scales), (b) EEG-based ACW is longer during internal attention (breath watch) than external attention (oddball task) in all subjects taken together, (c) advanced meditators show no such distinction with equal duration of their ACW during both internal and external attention (we replicated this finding in another dataset of expert meditators); (d) the advanced meditators internal-external ACW difference correlated with their experience of the degree of non-duality (psychological scales) during internal attention. Together, these findings suggest that the brains intrinsic neural timescales during internal and external attention play a key role in mediating the experience of non-duality in advanced meditators.

neuroscience↗

bioRxiv2024

Mindfulness-based Neurofeedback: A Systematic Review of EEG and fMRI studies

Neurofeedback concurrent with mindfulness meditation may reveal meditation effects on the brain and facilitate improved mental health outcomes. Here, we systematically reviewed EEG and fMRI studies of mindfulness meditation with neurofeedback (mbNF) and followed PRISMA guidelines. We identified 10 fMRI reports, consisting of 177 unique participants, and 9 EEG reports, consisting of 242 participants. Studies of fMRI focused primarily on downregulating the default-mode network (DMN). Although studies found decreases in DMN activations during neurofeedback, there is a lack of evidence for transfer effects, and the majority of studies did not employ adequate controls, e.g. sham neurofeedback. Accordingly, DMN decreases may have been confounded by general task-related deactivation. EEG studies typically examined alpha, gamma, and theta frequency bands, with the most robust evidence supporting the modulation of theta band activity. Both EEG and fMRI mbNF have been implemented with high fidelity in clinical populations. However, the mental health benefits of mbNF have not been established. In general, mbNF studies would benefit from sham-controlled RCTs, as well as clear reporting (e.g. CRED-NF).

neuroscience↗

bioRxiv2024

The Balanced Mind and its Intrinsic Neural Timescales in Advanced Meditators

A balanced mind, or equanimity, cultivated through meditation and other spiritual practices, is considered one of the highest mental states. Its core features include deidentification and non-duality. Despite its significance, its neural correlates remain unknown. To address this, we acquired 128-channel EEG data (n = 103) from advanced and novice meditators (from the Isha Yoga tradition) and controls during an internal attention (breath-watching) and an external attention task (visual-oddball paradigm). We calculated the auto-correlation window (ACW), a measure of brains intrinsic neural timescales (INTs) and assessed equanimity through self-report questionnaires. Advanced meditators showed higher levels of equanimity and shorter duration of INTs (shorter ACW) during breath-watching, indicating deidentification with mental contents. Furthermore, they demonstrated no significant differences in INTs between tasks, indicating non-dual awareness. Finally, shorter duration of INTs correlated with the participants subjective perceptions of equanimity. In conclusion, we show that the shorter duration of brains INT may serve as a neural marker of equanimity.

neuroscience↗

bioRxiv2024

Ideal efficacy photoswitches for TRPC4/5 channels harness high potency for spatiotemporally-resolved control of TRPC function in live tissues

Directly probing the endogenous biological roles of target proteins with high spatial and temporal resolution, as non-invasively and reproducibly as possible, is a shared conceptual goal for research across many fields, as well as for targeted therapies. Here we describe the rational conceptual design and test-case practical implementation of a photopharmacological paradigm to empower high-performance photomodulation studies in vivo. TRPC4/5 ion channels are involved in many spatiotemporally resolved circuits, from pain and anxiety, to reproductive signaling, digestion, and obesity. To unpick their biology requires spatiotemporally precise tools, which were lacking. We developed "ideal efficacy photoswitch" ligands to control their diverse functions in situ. These E{leftrightarrows}Z-photoswitchable ligands bias TRPC[4]/5 channel activity with exquisite photocontrol, from strong agonism under 360 nm, to low agonism at 385 nm, to strong antagonism at 410-460 nm. Cryo-EM structures of both TRPC4 and TRPC5 with both Z-agonists and E-antagonists support the rationale for efficacy switching through competitive E/Z isomer binding. Crucially, since the E/Z ratio is exclusively determined by the light wavelength applied, their channel photocontrol is exclusively wavelength-dependent, yet drug-concentration-independent: so is reproducible from cell culture to >millimetre-depth tissues. Indeed, we were able to photocontrol both direct and downstream TRPC4/5 biology in cell lines or primary cells in culture, from calcium flux, to primary neuron excitability and adrenaline release; and even in tissues, photoswitching small intestine motility and peristalsis. The TRPC4/5 ligands we develop will thus unlock a range of high-precision investigations in TRP biology. More broadly, we propose that the success of this efficacy photoswitch program, from concept to tissue level translation, is mainly a consequence of how biology has evolved proteins for efficacy control. We therefore foresee that a variety of functionally responsive protein targets, not only sensory and signaling ion channels and receptors, will be amenable to similarly high-performance photocontrol even in vivo, if a new generation of reagent development adopts this paradigm of ideal efficacy photoswitching. Table of Contents Graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=84 SRC="FIGDIR/small/602451v1_ufig1.gif" ALT="Figure 1"> View larger version (24K): org.highwire.dtl.DTLVardef@1f8e527org.highwire.dtl.DTLVardef@18c72d0org.highwire.dtl.DTLVardef@1c5d648org.highwire.dtl.DTLVardef@177203d_HPS_FORMAT_FIGEXP M_FIG C_FIG

cell biology↗

bioRxiv2023

Dietary reconstructions of Magdalenian canids from SW-Germany do not indicate that the area was a centre of early European wolf domestication

In their paper A refined proposal for the origin of dogs: the case study of Gnirshohle, a Magdalenian cave site, Baumann and colleagues[1] claim that their data support the hypothesis that the Hegau Jura was a potential center of early European wolf domestication, and that such a scenario becomes plausible considering a close proximity of canids and humans thereby introducing a controlled, or at least a restrictive diet. The study focusses on fossil remains of large canids from the Gnirshohle cave site in SW Germany. Morphometric data on only one specimen, GN-999, as well as collagen {delta}15N and {delta}13C isotopic data and mitochondrial DNA analyses on the Gnirshohle specimens and a comparative sample were used to conclude that the Gnirshohle specimens shed light on the origin of dogs as purported by the title of the paper. Here we argue that the paper is fundamentally flawed and excluded available relevant data.

paleontology↗

bioRxiv2021

Suppression of aminoglycoside-induced premature termination codon readthrough by the TRP channel inhibitor AC1903

Nonsense mutations, which occur in ~11% of patients with genetic disorders, introduce premature termination codons (PTCs) that lead to truncated proteins and promote nonsense-mediated mRNA decay. Aminoglycosides such as gentamicin and G418 permit PTC readthrough and so may address this problem. However, their effects are variable between patients, making clinical use of aminoglycosides challenging. In this study, we addressed the hypothesis that TRP non-selective cation channels contribute to the variable effect of aminoglycosides by controlling their cellular uptake. To attempt to identify the channel type involved, we tested AC1903, a 2-aminobenzimidazole derivative recently reported to selectively inhibit TRPC5 cation channels. AC1903 consistently suppressed G418 uptake and G418-induced PTC readthrough in the DMS-114 cell line and patient-derived JEB01 keratinocytes. In an effort to validate the suggested role of TRPC5, we tested an independent and more potent inhibitor called Pico145, which affects channels containing TRPC1, TRPC4 and TRPC5 but not other TRPCs or other channels. Unexpectedly, Pico145 was completely without effect, suggesting that AC1903 may work through other or additional targets. Consistent with this suggestion, AC1903 inhibited multiple TRPC channels including homomeric TRPC3, TRPC4, TRPC5, TRPC6 as well as concatemeric TRPC4-C1 and TRPC5-C1 channels, all with low micromolar IC50 values. It also inhibited TRPV4 channels but had weak or no effects on TRPV1 and no effect on another non-selective cation channel, PIEZO1. Overall, our study reveals a suppressor of aminoglycoside-mediated PTC readthrough (i.e., AC1903) but suggests that this compound has previously unrecognised effects. These effects require further investigation to determine the molecular mechanism by which AC1903 suppresses aminoglycoside uptake and PTC readthrough.

pharmacology and toxicology↗

bioRxiv2018

Out of Africa by spontaneous migration waves

Hominin evolution is characterized by progressive regional differentiation, as well as migration waves, leading to anatomically modern humans that are assumed to have emerged in Africa and spread over the whole world. Why or whether Africa was the source region of modern humans and what caused their spread remains subject of ongoing debate. We present a spatially explicit, stochastic numerical model that includes ongoing mutations, demic diffusion, assortative mating and migration waves. Diffusion and assortative mating alone result in a structured population with relatively homogeneous regions bound by sharp clines. The addition of migration waves results in a power-law distribution of wave areas: for every large wave, many more small waves are expected to occur. This suggests that one or more out-of-Africa migrations would probably have been accompanied by numerous smaller migration waves across the world. The migration waves are considered \"spontaneous\", as the current model excludes environmental or other factors. Large waves preferentially emanate from the central areas of large, compact inhabited areas. During the Pleistocene, Africa was the largest such area most of the time, making Africa the statistically most likely origin of anatomically modern humans, without a need to invoke additional environmental or ecological drivers.

evolutionary biology↗