Bassham, D. | Search bioRxiv

bioRxiv2025

MATERNAL AUTOPHAGY CONTRIBUTES TO GRAIN YIELD IN MAIZE

Maize is an important crop species that is cultivated worldwide, and increasing maize yield is one of the major goals of plant breeding. The subcellular degradation and recycling pathway known as autophagy is involved in many plant developmental processes including vegetative growth, reproductive development, seed development, and senescence. Here, we demonstrate that maize autophagy-defective atg10 mutants have delayed flowering and reduced kernel size, weight and number, leading to reduced grain yield. Reciprocal crosses between mutant and parental lines indicate that the maternal plant is the major contributor to the kernel phenotype in atg10 mutants, rather than the seed genotype. We hypothesize that this may be due to detrimental effects on nutrient remobilization from maternal tissue to seeds during kernel development, leading to reduced yield.

plant biology↗

bioRxiv2022

Integration of multi-omics data reveals interplay between brassinosteroid and TORC signaling in Arabidopsis

Brassinosteroids (BR) and Target of Rapamycin Complex (TORC) are two major actors coordinating plant growth and stress responses. BRs function through a signaling pathway to extensively regulate gene expression and TORC is known to regulate translation and autophagy. Recent studies revealed that these two pathways crosstalk, but a system-wide view of their interplay is still missing. Thus, we quantified the level of 23,975 transcripts, 11,183 proteins, and 27,887 phosphorylation sites in wild-type Arabidopsis and in mutants with altered levels of either BRASSINOSTEROID INSENSITIVE 2 (BIN2) or REGULATORY ASSOCIATED PROTEIN OF TOR 1B (RAPTOR1B), two key players in BR and TORC signaling, respectively. We found that perturbation of BIN2 or RAPTOR1B levels affects a common set of gene-products involved in growth and stress responses. Furthermore, we used the multi-omic data to reconstruct an integrated signaling network. We screened 41 candidate genes identified from the reconstructed network and found that loss of function mutants of many of these proteins led to an altered BR response and/or modulated autophagy activity. Altogether, these results establish a predictive network that defines different layers of molecular interactions between BR-or TORC-regulated growth and autophagy.

plant biology↗