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Biology subjects

Bari, K. A.

Publications and source records attributed to Bari, K. A..

2 recordsLinked to original sources

Adjusting extracellular pH restores proteostasis and extends lifespan in a yeast model of polyglutamine toxicity

Impaired proteostasis is a hallmark of aging and is associated with several neurodegenerative diseases, including Huntingtons Disease (HD) where the polyglutamine (polyQ) expanded Huntingtin aggregates to form insoluble inclusions bodies (IBs) associated with neurotoxicity. Chronological lifespan (CLS) in yeast resembles many aspects of aging of non-dividing cells such as neurons. During chronological aging, acidification of the culture media due accumulation of acetic acid is one of the major cell-extrinsic factors contributing to age-related cell death. Thus, buffering media pH to prevent acidification significantly extends longevity. Here, we found that cells expressing pathogenic polyQ expansion proteins display increased sensitivity to acetic acid and shortened CLS. Buffering media pH promotes both polyQ aggregation into IBs and promotes longevity. We also found that growth at alkaline pH induces the activation of heat shock response (HSR) in young cells. Such hormetic HSR activation subsequently allowed aged cells to mount a proper HSR in response to stresses such as heat shock or polyQ misfolding, leading to lifespan extension. Our study thus provides new insight into how pH can promote proteotoxic stress resistance and longevity by modulating the HSR.

cell biology↗

Tra1 controls the transcriptional landscape of the aging cell

Gene expression undergoes considerable changes during the aging process. The mechanisms regulating the transcriptional response to cellular aging remain poorly understood. Here, we employ the budding yeast Saccharomyces cerevisiae to better understand how organisms adapt their transcriptome to promote longevity. Chronological lifespan (CLS) assays in yeast measure the survival of non-dividing cells at stationary phase over time, providing insights into the aging process of post-mitotic cells. Tra1 is an essential component of both the yeast SAGA/SLIK and NuA4 complexes, where it recruits these complexes to acetylate histones at targeted promoters. Importantly, Tra1 regulates the transcriptional response to multiple stresses. To evaluate the role of Tra1 in chronological aging, we took advantage of a previously characterized mutant allele that carries mutations in the TRA1 PI3K domain (tra1Q3). We found that loss of functions associated with tra1Q3 sensitized cells to growth media acidification and shortens lifespan. Transcriptional profiling reveals that genes differentially regulated by Tra1 during the aging process are enriched for components of the response to stress. Notably, expression of catalases (CTA1, CTT1) involved in hydrogen peroxide detoxification decreases in chronologically aged tra1Q3 cells. Consequently, they display increased sensitivity to oxidative stress. tra1Q3 cells are unable to grow on glycerol indicating a defect in mitochondria function. Aged tra1Q3 cells also display reduced expression of peroxisomal genes, exhibit decreased numbers of peroxisomes and cannot grow on media containing oleate. Thus, Tra1 emerges as an important regulator of longevity in yeast via multiple mechanisms.

genetics↗