Biology subjects

Barbash, D. A.

Publications and source records attributed to Barbash, D. A..

8 recordsLinked to original sources

bioRxiv2026

Female behavioral cues control male courtship plasticity independent of female pheromones in African Drosophila melanogaster

Sexual interactions involve the exchange of information-including olfactory, auditory, and visual cues-that has been shaped by sexual selection to maximize fitness. While these courtship signals and behaviors are often characterized as stereotypical and species-specific, male courtship is plastic and can depend on the population identity of the courted female. The ability of a male to adjust his courtship behavior based on female identity has significant implications for how selection operates on courtship, potentially driving behavioral divergence between populations and the eventual emergence of new species. A major challenge is identifying the cues that males use to adjust their courtship strategy. We used Drosophila melanogaster to investigate the mechanisms facilitating courtship plasticity, focusing on male song production. Male song is often considered the paramount behavior performed by males and is stimulated by female pheromones. Previous observations have focused on cosmopolitan (non-African) genotypes, whereas the singing rate and singing plasticity is highly variable in African populations. In genotypes from Zimbabwe, females have a different major pheromone compound (5,9-HD) compared to non-African females and show strong behavioral preference for Zimbabwe males. We created a Zimbabwe genotype lacking 5,9-HD by disrupting the gene desat2 in the Zimbabwe Z53 strain. We tested the hypothesis that Zimbabwe male courtship plasticity depends on female pheromones by allowing males to court non-African, wild type Z53, and Z53 desat2 null mutant females. We found that males treated Z53 desat2 null females like wild type Z53 females, not using pheromone cues to determine singing and courtship plasticity. This suggests that other female behavioral feedback influences singing plasticity. This courtship plasticity could contribute to the asymmetrical reproductive isolation between these populations and could provide insight to the broad pattern of asymmetrical reproductive isolation across broad taxonomic groups.

evolutionary biology↗

bioRxiv2026

A method to screen for meiotic drive using embryonic markers

Meiotic drivers are selfish elements which co-opt gametogenesis to increase their own transmission. Driving alleles may spread in a population even if harmful to overall fitness, requiring the emergence of host suppressors to ameliorate these costs. In some cases, intense co-evolutionary arms races between drivers and their host genomes may occur. These conflicts have been invoked to explain the rapid evolution of karyotypes and reproduction-associated proteins across the tree of life. Despite their evolutionary importance, relatively few meiotic drivers have been well-characterized, in large part due to the difficulties inherent to detecting meiotic drivers, distinguishing them from viability effects, and performing systematic screens. To address these gaps, we present an approach to driver detection at the embryo stage in wild-derived D. melanogaster. By combining fluorescent markers with a method to induce embryonic arrest at a standard developmental stage, we detect transmission of wild-derived alleles as compared to their fluorescently marked homologs in early embryos, before most fitness differences among alleles (which may mimic drive) manifest. We provide proof-of-concept for the approach and identify several areas for future improvement.

genetics↗

bioRxiv2025

The Stellate meiotic drive system of Drosophila melanogaster is active in contemporary populations

Meiotic drivers are selfish elements that bias their own transmission so that they are overrepresented among the functional gametes produced. The selective costs imposed by drivers on their hosts may trigger intragenomic conflict, promoting the evolution of suppressors and fueling an ongoing arms race between drivers and suppressors. Stellate (Ste) is an X-linked tandemly arrayed multicopy gene. Its copy number ranges from 3 to more than 300 among Drosophila melanogaster strains from the Global Diversity Lines. In wild-type animals, Ste expression is usually suppressed by homologous piRNAs produced from the Suppressor of Stellate (Su(Ste)) array on the Y chromosome. Derepression of Ste in the absence of Su(Ste) results in the formation of proteinaceous crystals in spermatocytes, chromatin compaction defects, reductions in fertility, and female-biased sex ratios arising from under-recovery of Y-bearing sperm. Despite extensive study, the function of the Stellate array and evolutionary significance of its persistence in the genome have remained elusive. It has been suggested to be a now-inactive relic of an ancient meiotic drive system, as perturbations in lab stocks can produce Ste-mediated meiotic distortions. Meiotic drive occurring among natural variants, however, has not been reported. We established crosses between females with high Ste copy number X chromosomes and males carrying low Su(Ste) copy number Y chromosomes and found that the male progeny displayed non-Mendelian sex chromosome transmission. Importantly, deletion of the euSte array in an otherwise matched genetic background rescues this phenotype, demonstrating that Stellate is an active driver in contemporary populations.

evolutionary biology↗

bioRxiv2021

Stonewall prevents expression of testis-enriched genes and binds to insulator elements in D. melanogaster

Germline stem cells (GSCs) are the progenitor cells of the germline for the lifetime of an animal. In Drosophila, these cells reside in a cellular niche that is required for both their maintenance (self-renewal) and differentiation (asymmetric division resulting in a daughter cell that differs from the GSC). The stem cell-daughter cell transition is tightly regulated by a number of processes, including an array of proteins required for genome stability. The germline stem-cell maintenance factor Stonewall (Stwl) associates with heterochromatin, but its molecular function is poorly understood. We performed RNA-Seq on stwl mutant ovaries and found significant derepression of many transposon families but not heterochromatic genes. We also discovered that testis-enriched genes, including the differentiation factor bgcn and a large testis-specific cluster on chromosome 2, are upregulated or ectopically expressed in stwl mutant ovaries. Surprisingly, we also found that RNAi knockdown of stwl in somatic S2 cells results in ectopic expression of these genes. Using parallel ChIP-Seq and RNA-Seq experiments in S2 cells, we discovered that Stwl binds upstream of transcription start sites and localizes to heterochromatic sequences. We also find that Stwl is enriched at repetitive sequences associated with telomeres. Finally, we identify Stwl binding motifs that are shared with known insulator binding proteins. We propose that Stwl affects gene regulation by binding insulators and establishing chromatin boundaries.

genetics↗

bioRxiv2020

Divergent selection on behavioral and chemical traits contributes to isolation between populations of Drosophila melanogaster

Speciation is driven by traits that can act to prohibit mating between nascent lineages, including male courtship and female preference for male traits. Mating barriers involving these traits evolve quickly because there is strong selection on males and females to maximize reproductive success, and the tight co-evolution of mating interactions can lead to rapid diversification of sexual behavior. Using lineages of D. melanogaster that show strong asymmetrical reproductive isolation, we ask two key questions: which specific male traits are females selecting, and are these traits under divergent sexual selection? These questions have proven extremely challenging to answer, because even in closely related lineages males often differ in multiple traits related to mating behavior. We address these questions by estimating selection gradients for male courtship and cuticular hydrocarbons for two different female genotypes. We identify specific behaviors and particular cuticular hydrocarbons that are under divergent sexual selection and likely contribute to reproductive isolation. Additionally, we discovered that a subset of these traits are plastic; males adjust these traits based on the identity of the female genotype they interact with. These results suggest that even when male courtship is not fixed between lineages, ongoing selection can contribute to reproductive isolation.

evolutionary biology↗

bioRxiv2019

Rapid evolution at the telomere: transposable element dynamics at an intrinsically unstable locus

Drosophila telomeres have been maintained by three families of active transposable elements (TEs), HeT-A, TAHRE and TART, collectively referred to as HTTs, for tens of millions of years, which contrasts with an unusually high degree of HTT interspecific variation. While the impacts of conflict and domestication are often invoked to explain HTT variation, the telomeres are unstable structures such that neutral mutational processes and evolutionary tradeoffs may also drive HTT evolution. We leveraged population genomic data to analyze nearly 10,000 HTT insertions in 85 D. melanogaster genomes and compared their variation to other more typical TE families. We observe that occasional large-scale copy number expansions of both HTTs and other TE families occur, highlighting that the HTTs are, like their feral cousins, typically repressed but primed to take over given the opportunity. However, large expansions of HTTs are not caused by the runaway activity of any particular HTT subfamilies or even associated with telomere-specific TE activity, as might be expected if HTTs are in strong genetic conflict with their hosts. Rather than conflict, we suggest instead that distinctive aspects of HTT copy number variation and sequence diversity largely reflect telomere instability, with HTT insertions being lost at much higher rates than other TEs elsewhere in the genome. We extend previous observations that telomere deletions occur at a high rate, and surprisingly discover that more than a third do not appear to have been healed with an HTT insertion. We also report that some HTT families may be preferentially activated by the erosion of whole telomeres, implying the existence of HTT-specific host control mechanisms. We further suggest that the persistent telomere localization of HTTs may reflect a highly successful evolutionary strategy that trades away a stable insertion site in order to have reduced impact on the host genome. We propose that HTT evolution is driven by multiple processes with niche specialization and telomere instability being previously underappreciated and likely predominant.

genetics↗

bioRxiv2017

Continuous generation of tandem transposable elements in Drosophila populations provides a substrate for the evolution of satellite DNA

Eukaryotic genomes are replete with repeated sequences, in the form of transposable elements (TEs) dispersed across the genome or as satellite arrays, large stretches of tandemly repeated sequence. Many satellites clearly originated as TEs, but it is unclear how mobile genetic parasites can transform into megabase-sized tandem arrays. Comprehensive population genomic sampling is needed to determine the frequency and generative mechanisms of tandem TEs, at all stages from their initial formation to their subsequent expansion and maintenance as satellites. The best available population resources, short-read DNA sequences, are often considered to be of limited utility for analyzing repetitive DNA due to the challenge of mapping individual repeats to unique genomic locations. Here we develop a new pipeline called ConTExt which demonstrates that paired-end Illumina data can be successfully leveraged to identify a wide range of structural variation within repetitive sequence, including tandem elements. Analyzing 85 genomes from five populations of Drosophila melanogaster we discover that TEs commonly form tandem dimers. Our results further suggest that insertion site preference is the major mechanism by which dimers arise and that, consequently, dimers form rapidly during periods of active transposition. This abundance of TE dimers has the potential to provide source material for future expansion into satellite arrays, and we discover one such copy number expansion of the DNA transposon Hobo to ~16 tandem copies in a single line. The very process that defines TEs --transposition-- thus regularly generates sequences from which new satellites can arise.

genomics↗

bioRxiv2017

A pooled sequencing approach identifies a candidate meiotic driver in Drosophila

Meiotic drive occurs when a selfish element increases its transmission frequency above the Mendelian ratio by hijacking the asymmetric divisions of female meiosis. Meiotic drive causes genomic conflict and potentially has a major impact on genome evolution, but only a few drive loci of large effect have been described. New methods to reliably detect meiotic drive are therefore needed, particularly for discovering moderate-strength drivers that are likely to be more prevalent in natural populations than strong drivers. Here we report an efficient method that uses sequencing of large pools of backcross (BC1) progeny to test for deviations from Mendelian segregation genome-wide of single-nucleotide polymorphisms (SNPs) that distinguish the parental strains. We show that meiotic drive can be detected by a characteristic pattern of decay in distortion of SNP frequencies, caused by recombination unlinking the driver from distal loci. We further show that control crosses allow allele-frequency distortion caused by meiotic drive to be distinguished from distortion resulting from developmental effects. We used this approach to test whether chromosomes with extreme telomere-length differences segregate at Mendelian ratios, as telomeric regions are a potential hotspot for meiotic drive due to their roles in meiotic segregation and multiple observations of high rates of telomere sequence evolution. Using four different pairings of long and short telomere strains, we find no evidence that extreme telomere-length variation causes meiotic drive in Drosophila. However, we identify one candidate meiotic driver in a centromere-linked region that shows an ~8% increase in transmission frequency, corresponding to a ~54:46 segregation ratio. Our results show that candidate meiotic drivers of moderate strength can be readily detected and localized in pools of F1 progeny.

genetics↗