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Baranova, E.

Publications and source records attributed to Baranova, E..

4 recordsLinked to original sources

Challenges in reconstituting the peroxiredoxin 2:STAT3 transient redox-relay complex in vitro

Peroxiredoxin 2 (Prdx2) mediates redox signaling by transferring oxidative equivalents to target proteins such as STAT3, a redox-sensitive transcription factor implicated in inflammation and cancer. Although this interaction has been demonstrated in cells, reconstituting the Prdx2:STAT3 complex in vitro remains challenging due to its transient and redox-dependent nature. Here we test various conditions to stabilize the complex between taggless Prdx2 and the core fragment of STAT3 (CF-STAT3), including oxidants, detergents, the facilitator Annexin A2, anaerobic environments, and CovalX crosslinking. Complex formation was assessed via mass photometry, analytical size-exclusion chromatography (SEC), SEC-MALS, and electron microscopy (EM). No stable complex was observed under standard conditions. Anaerobic environments briefly stabilized the interaction, but cryo-EM could not resolve the structure. CovalX crosslinking yielded short-lived but homogeneous complexes. We found that Prdx2 is highly susceptible to hyperoxidation at its peroxidatic cysteine, particularly in the presence of DTT or excess H2O2, resulting in loss of function. Maintaining non-reducing conditions during purification preserved Prdx2 in an oxidation-competent state, promoting formation of the disulfide bond between the peroxidatic and resolving cysteines and thereby enabling reproducible detection of a weak complex with CF-STAT3. Our findings establish a framework for studying redox-relay protein complexes in vitro and highlight the importance of oxidation state management during protein handling.

molecular biology↗

Effectiveness of direct alignment between 18F-Fluorodeoxyglucose images and a standard-space template

Group analyses in neuroimaging often require spatial normalisation. The most common approach for this involves the use of anatomical images as intermediate references. A lack of a usable anatomical image may then lead to a participants data being excluded. This exclusion is a particular concern for challenging patient populations, such as those with movement disorders, and can introduce bias. We evaluated a direct alignment approach for 18F-Fluorodeoxyglucose (FDG-PET) images to a simulated PET standard-space template, which would eliminate the need for an anatomical scan. The performance of this method was compared against the conventional T1-weighted image-based alignment using data from 40 participants with Alzheimers disease and 47 healthy controls. Our results show that the direct alignment method performed as well as the conventional method in terms of image-template similarity. It also produced comparable region-of-interest (ROI) metabolic activity values and yielded more extensive and statistically significant group differences in a voxel-wise comparison of Alzheimers patients versus healthy controls. The findings suggest that direct alignment is a robust and effective alternative for FDG-PET image normalisation.

neuroscience↗

The capability of plant-bacteria consortia to reduce the genotoxicity of unsymmetrical dimethylhydrazine in the environment

Unsymmetrical dimethylhydrazine (UDMH) despite its proven high toxicity continues to be used in rocket technology and some other areas of human activity. In this work, the ability of plant-bacteria consortia to reduce the genotoxicity of UDMH incomplete oxidation products was investigated. Genotoxicity was assessed using a specific lux-biosensor Escherichia coli MG1655 pAlkA-lux sensitive to DNA alkylation in cell. For microbiological biodegradation, the Bacillus subtilis KK1112 strain was obtained by the isolation from soil with a subsequent selection for resistance to high UDMH concentrations (more than 5000 MAC). Its ability to biodegrade UDMH was shown by observing the reduction of DNA alkylation of the KK1112-treated UDMH. The ability of KK1112 cells to act in a bacterial-plant consortium with following fodder halo-phytes was studied: Bromus inermis Leyss, Medicago varia Mart. and Phleum pratense L. A synergistic reduction in the alkylating properties of UDMH oxidation products was observed under the combined use of bacteria and plant seedlings. The greatest effect was obtained when bacteria was used in combination with B. inermis. It was shown that KK1112 cells accelerate the seedlings development and mitigate the growth inhibition that occurs during incubation with UDMH. The obtained results indicate that it is optimal to introduce the bacterium KK1112 in combination with B. inermis plants for soils in arid climate zones during reclamation after UDMH exposure.

ecology↗

Understanding Complex Trait Susceptibilities and Ethnical Diversity in a Sample of 4,145 Russians Through Analysis of Clinical and Genetic Data

The population of Russia consists of more than 150 local ethnicities. The ethnic diversity and geographic origins, which extend from eastern Europe to Asia, make the population uniquely positioned to investigate the shared properties of inherited disease risks between European and Asian ethnicities. We present the analysis of genetic and phenotypic data from a cohort of 4,145 individuals collected in three metro areas in western Russia. We show the presence of multiple admixed ancestry clusters spanning from primarily European to Asian and high identity-by-descent sharing with the Finnish population. As a result, there was notable enrichment of Finnish-specific variants in Russia. We illustrate the utility of Russian-descent cohorts for discovery of novel population-specific genetic associations, as well as replication of previously identified associations that were thought to be population-specific in other cohorts. Finally, we provide access to a database of GWAS results for 465 unique phenotypes and allele frequencies.

genetics↗