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Biology subjects

Balasubramaniam, S.

Publications and source records attributed to Balasubramaniam, S..

2 recordsLinked to original sources

Harnessing the Intrinsic Dynamics of Biological Neural Networks for Reservoir Computing

Living neuronal networks exhibit nonlinear, recurrent, and evolving dynamics that make them promising substrates for reservoir computing, yet their computational use is complicated by spatial heterogeneity, spontaneous state transitions, and biological nonstationarity. Here, we investigate whether the native dynamics of a neuronal culture can be characterized and harnessed as a living reservoir without deliberately modifying the underlying recurrent network. Using multielectrode-array recordings and electrical perturbations, we characterize spontaneous population dynamics, validate channel-adaptive spike detection, and evaluate reservoir properties including nonlinearity, fading memory, state-dependent processing, separability, scalability, and temporal robustness. The neuronal reservoir exhibits nonlinear transformation, achieves 95.83\% XOR accuracy at the selected operating point, and retains stimulation-induced state information with characteristic relaxation times of approximately 30--46~ms. Importantly, separability depends on the pre-stimulation network condition, with a near-chaotic regime supporting broader high-separability regions than synchronized activity. Distinct stimulation conditions remain discriminable as the input space increases from 10 to 40 classes, while separability persists despite multi-hour neural drift. Finally, the reservoir is incorporated into a closed perception--action loop for Mario Kart control using a fixed readout. These results establish neuronal cultures as state-dependent living reservoirs whose native dynamics support computation.

neuroscience↗

In Silico Modeling of Virus Particle Propagation and Infectivity along the Respiratory Tract: A Case Study for SARS-COV-2

Respiratory viruses including Respiratory syncytial virus (RSV), influenza virus and cornaviruses such as Middle Eastern respiratory virus (MERS) and SARS-CoV-2 infect and cause serious and sometimes fatal disease in thousands of people annually. It is critical to understand virus propagation dynamics within the respiratory system because new insights will increase our understanding of virus pathogenesis and enable infection patterns to be more predictable in vivo, which will enhance targeting of vaccines and drug delivery. This study presents a computational model of virus propagation within the respiratory tract network. The model includes the generation network branch structure of the respiratory tract, biophysical and infectivity properties of the virus, as well as air flow models that aid the circulation of the virus particles. The model can also consider the impact of the immune response aim to inhibit virus replication and spread. The model was applied to the SARS-CoV-2 virus by integrating data on its life-cycle, as well as density of Angiotensin Converting Enzyme (ACE2) expressing cells along the respiratory tract network. Using physiological data associated with the respiratory rate and virus load that is inhaled, the model can improve our understanding of the concentration and spatiotemporal dynamics of virus.

systems biology↗