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Baird, A. H.

Publications and source records attributed to Baird, A. H..

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Disturbance-induced changes in size-structure promote coral biodiversity

Reef-building coral assemblages are typically species-rich, yet the processes maintaining coral biodiversity remain poorly understood. Disturbance has long been believed to promote coral species coexistence by reducing the strength of competition. However, such disturbance-induced effects have since been shown to be insufficient on their own to prevent competitive exclusion. Nevertheless, Modern Coexistence Theory has revealed other mechanisms by which disturbance and, more generally, environmental variation can favour coexistence. Here, we formulate, calibrate, and analyze a size-structured, stochastic coral competition model using field data from two common colony morphologies. These two coral morphologies, tabular and digitate, differ in their size-dependent vulnerability to dislodgement caused by wave action. We confirm that fluctuations in wave action can promote coral species coexistence. However, using a recently proposed partitioning framework, we show that, contrast to previous expectations, temporal variability in strength of competition did not promote coexistence. Instead, coexistence was enabled by differential fluctuations in size-dependent mortality among competitors. Frequent and intense disturbances resulted in monocultures of digitate corals, which are more robust to wave action than tabular corals. In contrast, infrequent or weak disturbances resulted in monocultures of tabular corals. Coexistence was only possible under intermediate levels of disturbance frequency and intensity. Given the sensitivity of coexistence to disturbance frequency and intensity, anthropogenic changes in disturbance regimes are likely to affect biodiversity in coral assemblages in ways that are not predictable from single population models.

ecology

An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives.

The phylogenetic utility of targeted enrichment methods has been demonstrated in taxa that often have a history of single gene marker development. These genomic capture methods are now being applied to resolve evolutionary relationships from deep to shallow timescales in clades that were previously deficient in molecular marker development and lacking robust morphological characters that reflect evolutionary relationships. Effectively capturing 1000s of loci, however, in a diverse group across a broad time scale requires a bait set that incorporates multiple baits per locus. We redesigned a custom bait set for the cnidarian class Anthozoa to target 1,436 UCE loci and 1,572 exon regions within the subclass Hexacorallia. We test this redesigned bait set on 99 specimens of hard corals (Scleractinia) spanning both the "complex" (Acroporidae, Agariciidae) and "robust" (Fungiidae) clades. With focused sampling in the staghorn coral genus Acropora we explore the ability of capture data to inform the taxonomy of a clade deficient in molecular resolution. A mean of 1850 ({+/-} 298) loci were captured per taxon (955 UCEs, 894 exons). A 75% complete concatenated alignment included 1792 loci (991 UCE, 801 exons) and [~]1.87 million base pairs. Parsimony informative sites varied from 48% for alignments including all three families, to 1.5% among samples within a single Acropora species. Maximum likelihood and Bayesian analyses recover highly resolved topologies and robust molecular relationships not previously found with traditional markers within the Acroporidae. Species level relationships within the Acropora genus do not support traditional morphological groups or morphological phylogenies. Both UCE and exon datasets delineated six well-supported clades within Acropora. The enhanced bait set for Hexacorallia will allow researchers to survey the evolutionary history of important groups of reef building corals where previous molecular marker development has been unsuccessful.

evolutionary biology