Biology subjects

Bailey, S. T.

Publications and source records attributed to Bailey, S. T..

4 recordsLinked to original sources

bioRxiv2026

Stage-specific and tomato-spotted wilt virus infection-induced changes in the salivary gland transcriptome of western flower thrips

Western flower thrips (WFTs) are critical vectors of tomato spotted wilt virus (TSWV), transmitting it via a circulative-propagative cycle. The insect-virus relationship is unusual in that only larvae can acquire the virus for transmission to plants to occur. During the larval stage, the virus circulates and replicates within many organs, reaching the salivary glands before the insect pupates, and remaining in infected organs when the insect becomes an adult. The virus continues to replicate in the salivary glands of adult insects, after which it is inoculated into plants via saliva during feeding. Understanding the interactions between TSWV and the WFT salivary glands is critical to furthering investigations of TSWV inoculation and efforts to block the spread of this devastating plant virus. Here, we document transcriptomic changes associated with TSWV infection of the salivary glands of adults (males and females) and second instar larvae. Gene sets enriched in adult male, female, and larval genes revealed a core set of genes associated with WFT salivary glands, as well as genes that differed between sexes and between adults and larvae. The transcriptome response to TSWV infection was higher in larvae (second instar in this study) than in adults, with nearly a 10x increase in differentially expressed genes. We hypothesize this occurred because larvae efficiently acquire the virus and the virus first enters the SGs at the L2 stage, whereas adult SGs are infected only if acquisition occurred in the larval stage. Thus, assessment of larvae detects responses to the early stages of infection, while assessment of adults detects responses to the later stages of infection. Similarly, functional changes in larval salivary glands were more diverse, with significant transcriptome differences associated with growth and development in this tissue during infection. Lastly, a comparative analysis of changes in a published SG proteome revealed a correlation between transcript and protein levels during infection, but little overlap between significant TSWV-responsive transcripts and proteins. These studies provide critical insight into the molecular changes associated with the first breach of the SGs in larvae by TSWV, revealing a markedly different transcriptomic response compared to that in adults.

molecular biology↗

bioRxiv2026

Landscape of reversion alterations in homologous recombination genes reveals evolutionary constraints

Reversion mutations (REVs) restore homologous recombination repair (HRR) and confer resistance to PARP inhibitors (PARPi) in HR-deficient cancers. Yet, their prevalence, mechanisms, and biological constraints remain undefined. We analyzed genomic profiling of 609,464 tissue and liquid biopsy samples across multiple cancer types to delineate the pan-cancer landscape of REVs. REVs were identified in eight HRR genes, most frequently BRCA2 and BRCA1 and notably never in ATM or CHEK2. REVs exclusively impacted truncating pathogenic variants, predominantly through large in-frame and exon-level deletions, associated with repetitive sequences. Conserved functional domains are relatively depleted of REVs. Structural modeling and functional studies support that exon-level deletions preserve critical domain architecture and confer PARPi resistance. The study establishes HRR reversion as a structurally permissive, yet evolutionarily constrained, resistance mechanism with implications on response, monitoring, and therapeutic strategy. One Sentence SummaryHomologous recombination reversion evolves through structurally tolerated, microhomology-driven alterations that restore DNA repair under therapeutic selection across cancers.

cancer biology↗

bioRxiv2022

Dehydration and infection elicit increased feeding in the western flower thrips, Frankliniella occidentalis, likely triggered by glycogen depletion

We examined water balance characteristics and influence of desiccating conditions on adult western flower thrips (Frankliniella occidentalis) physiology and behavior. Western flower thrips are globally invasive and likely to contend with shifts in water availability across their expansive geographic range. Basic water balance characteristics, including water mass and dry mass, were established for adult males and females, revealing a distinct sexual dimorphism wherein females are larger, but males retain a larger percentage of their mass as body water. Males lose relative water mass more quickly and their survival times are shorter when compared to females. RNA-seq analysis identified significant enrichment of factors associated with carbohydrate transport and metabolism in dehydrated males and females. A reduction of glycogen reserves was confirmed during dehydration. The probability of thrips feeding significantly increased when desiccation was a factor. Lastly, infection with Tomato spotted wilt orthotospovirus (TSWV), a principal plant-pathogenic virus transmitted by F. occidentalis, did not have a consistent and apparent influence on desiccation tolerance; however, a reduction in glycogen reserves, and an increase in feeding activity in infected thrips, very similar to that observed in dehydrated thrips, was observed. Our results establish the fundamental water balance characteristics of adult thrips, and indicate that dehydration significantly influences the survivorship and feeding behavior of thrips; crucial factors that contribute to their capacity to spread disease.

physiology↗

bioRxiv2019

Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability

The Antarctic midge, Belgica antarctica, is a wingless, non-biting midge endemic to Antarctica. Larval development requires at least two years, but adult life lasts only two weeks. The nonfeeding adults mate in swarms and females die shortly after oviposition. Eggs are suspended in a gel of unknown composition that is expressed from the female accessory gland. This project characterizes molecular mechanisms underlying reproduction in this midge by examining differential gene expression in whole males, females, and larvae, as well as in male and female accessory glands. Functional studies were used to assess the role of the gel encasing the eggs, as well as the impact of stress on reproductive biology. RNA-seq analyses revealed sex- and development-specific gene sets along with those associated with the accessory glands. Proteomic analyses were used to define the composition of the egg-containing gel, which is generated during multiple developmental stages and derived from both the accessory gland and other female organs. Functional studies indicate the gel provides a larval food source and thermal and dehydration buffer, all of which are critical for viability. Larval dehydration stress directly reduces production of storage proteins and key accessory gland components, a feature that impacts adult reproductive success. Modeling reveals that bouts of dehydration may significantly impact population growth. This work lays a foundation for further examination of reproduction in midges and provides new information related to general reproduction in dipterans. A key aspect is that reproduction and stress dynamics, currently understudied in polar organisms, are likely to prove critical for determining how climate change will alter survivability.

genomics↗