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Biology subjects

Bailey, J. K.

Publications and source records attributed to Bailey, J. K..

2 recordsLinked to original sources

Climate change velocity drives rapid evolution of foliar phenology in trailing edge populations

Here we tested the overarching hypothesis that climate change velocity drives rapid evolution in bud break phenology. With field and common garden studies, we used age cohorts within 17 populations of a foundation riparian tree species distributed across multiple strong environmental gradients in the western US. We provide evidence of contemporary evolution, as young trees in trailing-edge populations have evolved to break bud approximately six days earlier than old trees in these same populations. These populations experience greater water stress than populations at the core of the species distribution, and the magnitude of genetic divergence in bud-break phenology is related to the velocity of change in climate water deficit over the last 100 years. This relationship to climate change velocity did not exist in core populations, suggesting that, despite similar rates of change, a threshold of water deficit stress has yet to be surpassed in those regions. Overall, the interactive effects of old trees and trailing edge populations can provide useful insight into centuries of environmental history and each independently represent important benchmarks for understanding the context for contemporary environmental change.

ecology↗

In vitro selection of cyclized, glycosylated peptide antigens that tightly bind HIV high mannose patch antibodies

In vitro selection is typically limited to discovery of peptides, proteins and nucleic acids. Given the importance of carbohydrate-protein interactions in diverse areas of biology including cell adhesion/recognition, immunoregulation and host-pathogen interactions, directed-evolution-based methods for discovery of potent glycoligands are greatly needed. We have previously reported a method for in vitro selection of glycopeptides that combines mRNA display, alkynyl amino acid incorporation, and CuAAC "click" glycosylation. Herein, we describe extensions of this method that incorporate chemical cyclization, removal of N-terminal glycosylation sites and next-generation sequencing; as an approach to HIV immunogen design, we have then used this method to develop mimics of the High Mannose Patch (HMP), which is the region on HIV envelope protein gp120 most commonly targeted by HIV broadly neutralizing antibodies (bnAbs). We prepared libraries of 1012-14 glycopeptides about 50 amino acids in length, containing variable numbers of high mannose (Man9GlcNAc2) glycans and cyclization at varied sites. We performed selections to obtain binders of HIV bnAbs PGT128, PGT122, and gl-PGT121, a germline precursor of PGT122, and prepared numerous glycopeptide hits by chemical synthesis. Selected glycopeptides in some cases bound very tightly to their target HIV bnAb, e.g., with a KD as low as 0.5 nM for PGT128. These glycopeptides are of interest as immunogens and tools for HIV vaccine design.

immunology↗