Biology subjects

Babu, R.

Publications and source records attributed to Babu, R..

10 recordsLinked to original sources

bioRxiv2025

The Impact of Different Learning Processes on Acquisition, Transfer, and Proprioception in Complex Motor Tasks

Motor skill learning involves multiple mechanisms, including use-dependent learning (UDL), reinforcement learning (RL), and error-based learning (EBL). These operate over different time scales and neural pathways, contributing uniquely to skill acquisition, consolidation, and transfer. Here we asked how these mechanisms support the acquisition of a spatially complex maze navigation task in five groups of healthy young adults. Groups received one of five types of feedback during training of their unseen dominant hand: UDL (no feedback), RL (binary success/failure feedback with a static threshold), RLA (binary feedback with an adaptive threshold), RLB (binary feedback with adaptive threshold and brief flash of cursor feedback), or EBL (continuous real-time cursor feedback). Skill, transfer, and proprioceptive acuity were assessed pre- and post- training using a speed-accuracy function (SAF) for each hand and a two-alternative forced-choice shape discrimination task. Results showed that UDL and RL groups exhibited no improvement post-training, while EBL, RLA, and RLB groups demonstrated accuracy improvements. EBL and RLB participants experienced a significant reduction in movement variability, with EBL showing a greater decrease compared to UDL. The left-hand SAF revealed improvements in accuracy across all groups except UDL. All groups showed reduced variability in the left hand, suggesting intermanual transfer, with EBL transferring more variability improvements than UDL. No significant proprioceptive changes were observed in any group. These findings provide new insights into motor skill learning, emphasizing that even minimal feedback can facilitate complex skill acquisition and transfer and has significant implications for studies where error-based learning may not be applicable. New and NoteworthyMinimal, adaptive binary feedback can effectively support the acquisition and transfer of spatially complex motor skills. While use-dependent and static reinforcement learning failed to enhance performance, adaptive reinforcement and error-based feedback significantly improved accuracy and reduced movement variability. Notably, these gains transferred to the untrained hand, highlighting the potential of reinforcement-based strategies in contexts where error-based learning is limited or unavailable, offering important implications for rehabilitation and motor training design.

neuroscience↗

bioRxiv2025

Network dynamics for sensory prioritization: Functional connectivity related to individual sensory weighting of vision versus proprioception during upper limb control

Precise control of the hand requires the dynamic integration of visual and proprioceptive (body position sense) sensory cues with internal models, task goals, and motor plans. Individual differences in how visual and proprioceptive cues are weighted have been related to neural substrates, such as posterior parietal regions, yet the underlying neural dynamics are unclear. This study investigated the relationship between visuo-proprioceptive perception during a bimanual pointing task and the whole-brain network dynamics using resting-state functional magnetic resonance imaging (rsfMRI) with both atlas-based and individually-localized ROI seeds. Our results confirm the existence of individual sensory biases, and find they have systematic influences on functional connectivity. Activity between sensorimotor regions and default mode network (DMN) nodes was related to sensory weighting (e.g. individual degree of reliance on vision versus proprioception) and may reflect updating of internal models. The ventral premotor cortex (PMv) emerged as an important node with functional connections suggesting its role for integrating motor plans, internal models, and sensory percepts. Connections from multisensory integration regions like the middle temporal gyrus (MTG) and the superior parietal lobule (SPL), and motor coordination regions in the cerebellum, were related to increased reliance on visual versus proprioceptive information. These findings suggest that individual sensory biases during sensorimotor behavior may be characterized by specific and specialized patterns of neural activity. This research establishes a foundational exploration of the neural systems underlying sensorimotor processing, supporting theories suggesting that learning in either the sensory or motor system may also cause plasticity in the other.

neuroscience↗

bioRxiv2024

Computational prediction of cyclotides from Viola odorata as potential inhibitors against the neuraminidase of Streptococcus pneumoniae

Cyclotides are naturally occurring peptides characterized by a cyclic cystine knot, which provides them with exceptional structural stability. In addition to their stability, cyclotides exhibit diverse therapeutic activities including antimicrobial, antiviral and antitumor activities, making them promising candidates in drug discovery. However, computational studies aimed at identifying cyclotide-based inhibitors for infectious diseases remain limited. To this end, we conducted a virtual screening of cyclotides from an Indian medicinal plant Viola odorata to identify potential inhibitors against a bacterial pathogen causing respiratory infections. We compiled a library of 93 cyclotides by retrieving their structures from public domain or predicting them using the AlphaFold server. We then docked these cyclotides against the neuraminidase protein of Streptococcus pneumoniae and analyzed the interacting residues and binding energies to identify top five potential inhibitors namely, kalata S, kalata B1, cycloviolacin O15, vodo L12, and cycloviolacin O36. Thereafter, we performed molecular dynamics simulations of the protein-cyclotide complexes, and observed that the cyclotides remained stable within the complex. Altogether, this study is the first computational effort to identify potential cyclotide inhibitors against bacterial pathogen causing respiratory diseases, which can be further pursued for experimental validation to develop novel therapeutic agents for respiratory infections.

pharmacology and toxicology↗

bioRxiv2024

Somatosensory cortex and body representation: Updating the motor system during a visuo-proprioceptive cue conflict

The brains representation of hand position is critical for voluntary movement. Representation is multisensory, combining visual and proprioceptive cues. When these cues conflict, the brain recalibrates its unimodal estimates, shifting them closer together to compensate. Converging evidence from research in perception, behavior, and neurophysiology suggest that such updates to body representation are communicated to the motor system to keep hand movements accurate. We hypothesized that primary somatosensory cortex (SI) is crucial in this updating process due to its role in proprioception and connections with primary motor cortex. We tested this hypothesis in two experiments. We predicted that proprioceptive, but not visual, recalibration would be associated with change in short latency afferent inhibition (SAI), a measure of sensorimotor integration (influence of sensory input on motor output) (Expt. 1). We further predicted that modulating SI activity with repetitive transcranial magnetic stimulation (TMS) should affect recalibration of the proprioceptive estimate of hand position, but have no effect on the visual estimate or on the normal inverse relationship between proprioceptive and visual recalibration (Expt. 2). Our results are consistent with these predictions, supporting the idea that (1) SI is indeed a key region in facilitating motor system updates based on changes in body representation, and (2) this function is mediated by unisensory (proprioceptive) processing, separate from multisensory visuo-proprioceptive computations. Other aspects of the body representation (visual and multisensory) may be conveyed to the motor system via separate pathways, e.g. from posterior parietal regions to motor cortex. Significance StatementRepresentation of the hand, which is critical for accurate control of movement, comes from weighting and combining available proprioceptive (position sense) and visual cues. Our results suggest that when the hand representation is modified by introducing a conflict between these cues, the motor system receives updates directly from the primary somatosensory cortex (SI). These updates are specific to the change in proprioceptive representation and are absent when cues are not in conflict. This may represent a unisensory pathway to the motor system that conveys information about hand representation, acting in parallel with multisensory pathways involving posterior parietal and premotor regions.

neuroscience↗

bioRxiv2024

The role of feedback in responding to gradual and abrupt visuo-proprioceptive cue conflict

When people observe conflicting visual and proprioceptive cues about their static hand position, visuo-proprioceptive recalibration results. Recalibration also occurs during gradual or abrupt visuomotor adaptation, in response to both the cue conflict and sensory prediction errors experienced as the hand reaches to a target. Here we asked whether creating a cue conflict gradually vs. abruptly, or providing error feedback, affects recalibration in a static hand. We examined participants responses to a 70 mm visuo-proprioceptive conflict, imposed by shifting the visual cue forward from the proprioceptive cue (static left hand). Participants pointed with their unseen right hand to indicate perceived bimodal and unimodal cue positions. Conflict was introduced gradually (groups 1 and 2) or abruptly (groups 3 and 4), with performance feedback present (groups 2 and 4) or absent (groups 1 and 3). For abrupt groups, most behavioral change occurred immediately after the conflict began. No-feedback groups (1 and 3) showed comparable magnitudes of overall recalibration, indicating that abrupt and gradual conflicts result in similar recalibration but with different timings. Motor adaptation was evident in the indicator hand with performance feedback (groups 2 and 4). However, performance on a static ruler task suggests proprioceptive recalibration also occurred despite the presence of feedback. Control groups confirmed accurate performance on the pointing task despite the visual cue shift. These findings highlight the distinct timing of recalibration mechanisms for gradual versus abrupt cue conflicts and potential smaller contribution of error mechanisms for a static conflict. New and NoteworthyThe brain may handle spatial conflicts between visual and proprioceptive cues differently for a dynamic hand undergoing visuomotor adaptation than for a static hand. In a static hand, abrupt conflict triggered immediate recalibration without further adjustment, and feedback had little impact on recalibration. This suggests varying roles of multisensory and error mechanisms across motor contexts, underscoring the importance of examining a variety of motor contexts to understand and predict behavior.

neuroscience↗

bioRxiv2023

Beyond Traditional Methods: Innovative Integration of LISS IV and Sentinel 2A Imagery for Unparalleled Insight into Himalayan Ibex Habitat Suitability

Despite advancements in remote sensing, satellite imagery is underutilized in conservation research. Multispectral data from various sensors have great potential for mapping landscapes, but distinct spectral and spatial resolution capabilities are crucial for accurately classifying wildlife habitats. Our study aimed to develop a technique for precisely discerning habitat categories for the Himalayan Ibex (Capra sibirica) using different satellite imagery. To address both spectral and spatial challenges, we utilized LISS IV and Sentinel 2A data and integrated the LISS IV data with Sentinel 2A data along with their corresponding geometric information. Employing multiple supervised classification algorithms, we found the Random Forest (RF) algorithm to outperform others. The integrated (LISS IV-Sentinel 2A) classified image achieved the highest accuracy, with an overall accuracy of 86.17% and a Kappa coefficient of 0.84. To map the suitable habitat of the Ibex, we conducted ensemble modeling using the Land Cover Land Use (LCLU) of all three image types (LISS IV, Sentinel 2A, Integrated) and other predictors such as topographical, soil type, vegetation, and water radiometric indices. The integrated model provided the most accurate prediction of suitable habitat for the Ibex, surpassing the other two LCLU classes derived from individual images. The Soil Adjusted Vegetation Index (SAVI) and elevation were identified as crucial factors in identifying suitable habitats These findings hold valuable implications for the development of effective conservation strategies, as accurate classification schemes enable the identification of vital landscape elements. By precisely classifying LULC satellite images and identifying crucial habitats for the Ibex, this pilot study provides a new and valuable strategy for conservation planning. It enhances our ability to preserve and protect the habitat of wildlife species in the mountain ecosystem of the Himalayas.

ecology↗

bioRxiv2023

5'-NADylation of RNA is well-tolerated by bacterial cell

Recently discovered ability of various RNA polymerases (RNAPs) of bacteria and eukaryotes to initiate RNA synthesis with cofactors such as NAD+/NADH (nicotinamide adenine dinucleotide). This phenomenon was quickly dubbed "non-canonical capping" as the extra 5 moieties of RNA resemble eukaryotic m7G cap superficially. NAD must outcompete abundant ATP, to serve as initiating nucleotide. It is still unclear which physiological conditions permit significant RNA NADylation and to what degree NADylation serves typical functions of a canonical cap in bacteria. Here we found that the extent of NADyation depends primarily on fidelity of transcription initiation -NAD concentration, specific contacts of RNAP active site with NAD/ATP alternative substrates, and genomic DNA supercoiling. It is much less affected by posttranscriptional processes such as de-capping, processing by main 5-dependent ribonucleases RNaseE and oligoribonuclease. 5-NAD inhibits neither translation of a leaderless 5-NAD-RNA nor a physiological base-pairing of small regulatory NADylated RNA with its antisense target RNA. Translation exposes 5-NAD for de-capping by NudC enzyme.

molecular biology↗

bioRxiv2023

Genomic perspectives of SARS CoV-2 in liver disease patients with its clinical correlation: A single centre retrospective study

BackgroundSevere Acute Respiratory Syndrome Coronavirus-2 (SARS CoV-2), is a causative agent of current global pandemic of Coronavirus disease-19 (COVID-19). Due to propagated outbreak and global vaccination drive an immense immunological selection pressure has been exerted on SARS CoV-2 leading to evolution of new variants. This study was performed to compare the mutational and clinical profile of liver disease patients infected with different variants of SARS CoV-2. MethodologyThis was a single-centre, retrospective, cohort study in which clinicogenomic analysis of liver disease (LD) patients infected with SARS CoV-2 was performed. Complete demographic and clinical details were retrieved from Hospital Information System (HIS). QC-threshold passed FASTA files containing sequences from COVID-19 patients (n=174) were compared with a reference genome of SARS-CoV-2 isolate named Wuhan-Hu-1 (NCBI Reference Sequence: NC_045512.2) for mutational analysis. ResultsOut of 232 finally analysed patients 137 (59.1%) were LD-CoV (+) and 95 (40.9%) were LD-CoV(-). LD patients with comorbidities were affected more with COVID-19 (p=0.002). On comparing the outcome in the terms of mortality, LD-CoV (+) had 2.29 times (OR 2.29, CI 95%, 1.25-4.29) higher of odds of succumbing to COVID-19 (p=0.006). Multivariate regression analysis revealed, abdominal distention (p=0.05), severe COVID-19 pneumonia (p=0.046) and the change in serum bilirubin levels (p=0.005) as well as Alkaline phosphatase (ALP) levels (p=0.003) to have an association with adverse outcome in LD patients with COVID-19. In Delta (22%) and Omicron (48%) groups, Spike gene harboured maximum mutations. On comparing the mutations between LD-CoV(+/D) and LD-CoV(+/O) a total of nine genes had more mutations in LD-CoV(+/O) whereas three genes had more mutations in LD-CoV(+/D). ConclusionWe concluded that LD patients are more susceptible to COVID-19 as compared to a healthy adult with associated adverse clinical outcomes in terms of mortality and morbidity. Therefore this special group should be given priority while devising and introducing new vaccination and vaccination policies. The infection with different variants did not result in different outcome in our group of patients.

microbiology↗

bioRxiv2022

Retention of visuo-proprioceptive recalibration in estimating hand position

The brain estimates hand position using visual and proprioceptive cues, which are combined to give an integrated multisensory estimate. Spatial mismatches between cues elicit recalibration, a compensatory process where each unimodal estimate is shifted closer to the other. It is unclear how well visuo-proprioceptive recalibration is retained after mismatch exposure. Here we asked whether direct vision and/or active movement of the hand can undo visuo-proprioceptive recalibration, and whether recalibration is still evident 24 hours later. 75 participants performed two blocks of visual, proprioceptive, and combination trials, with no feedback or direct vision of the hand. In Block 1, a 70 mm visuo-proprioceptive mismatch was gradually imposed, and recalibration assessed. Block 2 tested retention. Between blocks, Groups 1-4 rested or made active movements with their directly visible or unseen hand for several minutes. Group 5 had a 24-hour gap between blocks. All five groups recalibrated both vision and proprioception in Block 1, and Groups 1-4 retained most of this recalibration in Block 2. Interestingly, Group 5 showed an offline increase in proprioceptive recalibration, but retained little visual recalibration. Our results suggested that visuo-proprioceptive recalibration is robustly retained in the short-term. In the longer term, contextual factors may affect retention.

neuroscience↗

bioRxiv2021

Bacterial supergroup specific "Cost" of Wolbachia infections in Nasonia vitripennis

The maternally-inherited endosymbiont, Wolbachia, is known to alter the reproductive biology of its arthropod hosts for its benefit and can induce both positive and negative fitness effects in many hosts. Here we describe the effects of the maintenance of two distinct Wolbachia infections, one each from supergroups A and B, on the parasitoid host Nasonia vitripennis. We compare the effect of Wolbachia infections on various traits between the uninfected, single A infected, single B infected, and the double infected strains with their cured versions. Contrary to the previous reports, our results suggest that there is a significant cost associated with the maintenance of Wolbachia infections where traits like family size, fecundity, longevity, and rates of male copulation are compromised in Wolbachia infected strains. The double infected and supergroup B infection strains show higher Wolbachia titer than supergroup A. The double infected Wolbachia strain has the most detrimental impact on the host as compared to single infections. Moreover, there is a supergroup-specific negative impact on these wasps as the supergroup B infections elicit the most pronounced negative effects. These findings raise important questions on the mechanism of survival and maintenance of these reproductive parasites in arthropod hosts.

evolutionary biology↗