Biology subjects

Azizi, L.

Publications and source records attributed to Azizi, L..

8 recordsLinked to original sources

bioRxiv2026

Exosome-Mediated Bidirectional Signaling Regulates Glioma Stem-Cell Homeostasis and Radiation-Induced Plasticity

Background: Glioblastoma (GBM) is an aggressive brain malignancy characterized by therapeutic resistance and frequent recurrence. Glioma-initiating cells (GICs), also known as glioma stem cells (GSCs), contribute to these features through self-renewal and resistance to genotoxic stress. Radiation therapy can paradoxically replenish the GIC compartment by inducing stem-like properties in non-stem glioma cells. We investigated whether exosomes mediate bidirectional communication that maintains the balance between GIC and non-stem populations at steady state and following irradiation. Methods: Exosomes were isolated from GIC-enriched gliomaspheres and differentiated monolayer cultures of the patient-derived GBM lines HK-374 and HK-390. Vesicles were characterized by transmission electron microscopy, nanoparticle analysis, and detection of CD63. Recipient cells were exposed to exosomes with or without 4 Gy irradiation. GIC abundance and function were evaluated using a ZsGreen-ornithine decarboxylase degron reporter, sphere-formation assays, and extreme limiting dilution analysis. Exosomal protein cargo was characterized by liquid chromatography-tandem mass spectrometry and Gene Ontology enrichment analysis. Single-cell RNA sequencing was used to evaluate changes in cellular composition upon exosome treatment. Results: Isolated vesicles displayed characteristic exosomal morphology, a mean diameter of 41.6 +/- 14.7 nm, and CD63 expression. Irradiation produced a 12-fold increase in GIC reporter-positive cells among initially reporter-negative differentiated cells. Gliomasphere-derived exosomes significantly and dose-dependently suppressed this radiation-induced phenotype conversion and reduced functional GIC frequency and self-renewal in both patient-derived lines. Conversely, exosomes from GIC-depleted monolayer cultures increased reporter-positive cells two- to three- fold and enhanced the frequency and self-renewal of existing GICs. Proteomic analysis identified 1,796 exosomal proteins, including 336 differentially abundant candidates. Gliomasphere-derived exosomes were enriched in proteins associated with translation, RNA binding, actin organization, cytoskeletal regulation, and intracellular trafficking. Monolayer-derived exosomes were enriched in extracellular-matrix and stem-cell-niche components, including NID2, LAMA5, LAMB1, LAMB2, LAMC1, THBS1, TGFBI, IQGAP3, and APOE. Single-cell transcriptomic analysis showed that gliomasphere-derived exosomes prevented the radiation-induced expansion of neural progenitor-like cells, consistent with suppression of an induced stem-like state. Treatment of gliomaspheres with monolayer-derived exosomes left their overall cellular composition largely but enriched MYC-target, E2F-target, and oxidative-phosphorylation programs, suggesting that increased sphere formation may partly reflect enhanced proliferative capacity. Conclusions: GBM cells use exosomes to establish a bidirectional feedback circuit between stem-like and differentiated tumor-cell compartments. GIC-derived exosomes constrain radiation-induced conversion of non-stem glioma cells into GICs, whereas differentiated-cell-derived exosomes promote a niche that supports GIC maintenance and self-renewal, potentially through expansion of a mixed-vascular-like population containing neurovascular progenitors. Whether exosomal IQGAP3 contributes to the expansion of this GIC population remains to be determined. These findings identify exosome-mediated intercellular communication as a potential mechanism regulating GBM cellular homeostasis, treatment resistance, and recurrence.

neuroscience↗

bioRxiv2025

Design and Biological Activity of a Novel Brain Penetrant Urea Compound Against Glioblastoma

Glioblastoma (GBM) remains the most lethal primary brain tumor, largely due to therapy-resistant glioma stem cells (GSCs) and the ability of non-stem cells to dedifferentiate under therapeutic pressure. We developed MXC-017, a novel urea-based compound that crosses the blood-brain-barrier, directly targets GSCs, and prevents radiation-induced GSC formation. Using click chemistry pull-down and mass spectrometry, we identified vimentin as the target of MXC-017, further validated by in silico docking. Global transcriptomic profiling (bulk RNA-seq) and single-cell RNA-seq analyses revealed MXC-017s efficacy with minimal off-target effects, supported by metabolic and kinome assays. Normal cell toxicity was negligible in fibroblasts, microglia, astrocytes, and murine neural progenitors. Maximum tolerated dose was identified and we observed significantly extended median survival in 17 PDOX GBM models when treated with MXC-017 plus radiation, benchmarked against standard-of-care temozolomide. These findings underscore the therapeutic potential of vimentin-targeting agents to overcome radiation resistance and improve outcomes for GBM patients. Statement of SignificanceGlioblastomas distinctive nature and the blood-brain barrier hamper therapies targeting therapy-resistant GSCs. We developed a novel urea-based agent that crosses the barrier, targets GSCs, and prevents radiation-induced GSC formation. With minimal off-target effects, reduced toxicity, and superior survival in PDOX models, it offers potential to improve outcome in GBM.

neuroscience↗

bioRxiv2025

Combined quetiapine and radiation therapy approach to treat mesothelioma-initiating cells and increase survival in a mouse model of mesothelioma

IntroductionMalignant pleural mesothelioma (MPM) is a rare thoracic cancer associated with poor prognosis and low survival rates. In solid cancers, repurposed dopamine receptor antagonists have been shown to have anti-cancer effects. Moreover, in combination with radiotherapy, quetiapine (QTP), a dopamine (D) 2/3 receptor antagonist, has been shown to interfere with self-renewal capacity in glioma-initiating cells and increase survival in mouse models of glioblastoma. In this study we explore combined treatment effects in MPM. MethodsUsing mesothelioma cell lines, MSTO-211H, H2052, and H2452, and a MSTO-211H-derived orthotopic xenograft mouse model of MPM we examined how QTP combined with radiation affects mesothelioma-initiating cells (MICs) in vitro and survival in vivo. Subsequently, bulk and single cell RNA sequencing was used to characterize the transcriptomic landscape of MSTO-211H treated with combined radiation and QTP. ResultsWe demonstrate that combining QTP with radiation reduces MIC self-renewal capacity and stem cell frequency. In vivo, this combination therapy significantly extends the median survival of mesothelioma-bearing mice. Clonogenic survival assays revealed that QTP does not enhance radiosensitivity in the tested mesothelioma cell lines. Sequencing data revealed, combined treatment downregulated cell cycle and proliferation pathways, depleted cancer stem cells, and increased cellular senescence. ConclusionTaken together, our study highlights the therapeutic potential of radiation with QTP in the treatment of MPM.

cancer biology↗

bioRxiv2025

Dissociable effects of LSD and MDMA on striato-cortical connectivity in healthy subjects

IntroductionLysergic acid diethylamide (LSD) and 3,4-Methylenedioxymethamphetamine (MDMA) are widely used psychoactive drugs and their potential use in psychiatric medicine is currently generating interest. The mechanism by which these drugs may assist recovery in addiction, mood disorders and post-traumatic stress disorder (PTSD) is still not well understood. Most investigations of the effects of these drugs on brain activity have focussed on cortical resting-state networks, however the striatum is a key reward and motivation hub of the brain and aberrant striatal processing may be part of the pathophysiology of these disorders. Consequently, we investigated striatal connectivity following acute MDMA and LSD administration. MethodResting-state fMRI (rs-fMRI) data were acquired, and seed-voxel functional connectivity analyses were used with the striatum subdivided into three seed regions: the associative, limbic, and sensorimotor striatum. Within-network connectivity was measured using group mean network maps and whole-brain connectivity (seed-to-voxel) was also examined. ResultsNeither MDMA nor LSD significantly changed within-network connectivity of any of the three striatal seed regions. However, striatal connectivity with other brain regions was significantly altered with both MDMA and LSD. Most notably, MDMA reduced connectivity between the limbic striatum and the amygdala, while LSD increased connectivity between the associative striatum and the frontal, sensorimotor, and visual cortices. ConclusionChanges in connectivity were mostly observed outside the standard striatal networks, consistent with previous findings that psychedelics reduce network modularity or between-network segregation and increase connectivity across standard networks.

neuroscience↗

bioRxiv2024

Targeting Innate Immune Signaling in Glioma-Initiating Cells Impairs Self-Renewal and Radiation-Induced Cellular Plasticity

Organisms constantly face environmental stressors that threaten their cellular and genomic integrity. In their response, pathogen-associated molecular patterns (PAMPs) and/or damage-associated molecular patterns (DAMPs) are detected by pattern recognition receptors (PRRs) and trigger the innate immune response. In this study we tested the hypothesis that DAMPs contribute to radiation-induced cellular plasticity in Glioblastoma (GBM). GBM is known to be organized hierarchically with a small number of glioma-initiating cells (GICs) driving treatment resistance and recurrences. Using patient-derived GBM specimens, we employed sphere forming capacity assays and in vitro extreme limiting dilution assays to examine how innate immune receptor signaling impacts the maintenance and self-renewal of GICs. By leveraging an imaging system for putative GICs we determined de novo induction of GICs from non-stem glioma cells. We find that GIC maintenance after irradiation is mediated by cGAS-independent STING signaling, possibly involving signaling through TLR4 and TLR9. Induction of radiation-induced plasticity involves TLR3 signaling, with potential roles for other receptors and processes modulated by MyD88. These findings suggest that targeting innate immune signaling could prevent radiation-induced cellular plasticity for potential therapeutic benefit.

cancer biology↗

bioRxiv2022

Characterizing endogenous delta oscillations non-invasively in humans

Rhythmic activity in the delta frequency range (0.5 - 3 Hz) is a prominent feature of brain dynamics. Here, we examined whether spontaneous delta oscillations, as found in invasive recordings in awake animals, can be observed in non-invasive recordings pewwrformed in humans with magnetoencephalography (MEG). In humans, delta activity is commonly reported when processing rhythmic sensory inputs, with direct relationships to behaviour. However, rhythmic brain dynamics observed during rhythmic sensory stimulation cannot be interpreted as an endogenous oscillation. To test for endogenous delta oscillations we analysed human MEG data during rest. For comparison, we additionally analysed two conditions in which participants engaged in spontaneous finger tapping and silent counting, arguing that internally rhythmic behaviours could incite an otherwise silent neural oscillator. A novel set of analysis steps allowed us to show narrow spectral peaks in the delta frequency range in rest, and during overt and covert rhythmic activity. Additional analyses in the time domain revealed that only the resting state condition warranted an interpretation of these peaks as endogenously periodic neural dynamics. In sum, this work shows that using advanced signal processing techniques, it is possible to observe endogenous delta oscillations in non-invasive recordings of human brain dynamics.

neuroscience↗

bioRxiv2021

Episodic timing: how spontaneous alpha clocks, retrospectively

We seldom time life events intently yet recalling the duration of events is lifelike. Is episodic time the outcome of a rational after-thought or of physiological clocks keeping track of time without our conscious awareness of it? To answer this, we recorded human brain activity with magnetoencephalography (MEG) during quiet wakefulness. Unbeknownst to participants, we asked them after the MEG recording to guess its duration. In the absence of overt attention to time, the relative amount of time participants alpha brain rhythms ( ~10 Hz) were in bursting mode predicted participants retrospective duration estimate. This relation was absent when participants prospectively measured elapsed time during the MEG recording. We conclude that bursts embody discrete states of awareness for episodic timing. One-Sentence SummaryIn the human brain, the relative number of alpha oscillatory bursts at ~10 Hz can tell time when the observer does not attend to it.

neuroscience↗

bioRxiv2020

Cancer associated talin point mutations disorganise cell adhesion and migration

Talin-1 is a key component of the multiprotein adhesion complexes which mediate cell migration, adhesion and integrin signalling and has been linked to cancer in several studies. We analysed talin-1 mutations reported in the COSMIC (Catalogue of Somatic Mutations in Cancer) database and developed a bioinformatics pipeline to predict the severity of each mutation. These predictions were then assessed using biochemistry and cell biology experiments. With this approach we were able to identify several talin-1 mutations affecting integrin activity, actin recruitment and Deleted in Liver Cancer 1 localization. We explored potential changes in talin-1 signalling responses by assessing impact on migration, invasion and proliferation. Altogether, this study describes a pipeline approach of experiments for crude characterization of talin-1 mutants in order to evaluate their functional effects and potential pathogenicity. Our findings suggest that cancer related point mutations in talin-1 can affect cell behaviour and so may contribute to cancer progression.

cancer biology↗