Arra, A. | Search bioRxiv

bioRxiv2026

Human landscape modification shapes foraging preferences and sucrose responsiveness of honey bees in Asia

Landscape composition is central in shaping how pollinators utilise floral resources, yet its influence on foraging behaviour of co-occurring Asian honey bees remains underexplored. Resolving this gap is crucial to understand how closely-related, native and introduced species maintain foraging efficiency in rapidly changing environments. We investigated nectar preferences, sucrose responsiveness, and foraging task partitioning in three co-occurring honey bee species in India: Apis florea (native open-nesting), Apis cerana (native cavity-nesting), and Apis mellifera (introduced cavity-nesting), across forest, agricultural, and urban landscapes. Landscape type strongly influenced crop sugar concentrations of honey bees. While all species collected high-concentration nectar in forests, A. mellifera and A. cerana collected lower concentrations than A. florea in urban habitats. A. florea showed consistent preference for high-concentration nectar across landscapes. Complementing this, sucrose responsiveness assays revealed a lower responsiveness of A. florea compared to cavity-nesting species. Foraging task partitioning differed among species, but interestingly, also among landscapes. While A. cerana predominantly collected nectar, A. mellifera foraged equally for pollen, nectar and water, and A. florea shifted task allocation across landscapes. In conclusion, we provide the first comparative evidence that landscape composition and species characteristics jointly shape foraging preferences and organisation of foraging labour in Asian honey bees.

ecology↗

bioRxiv2018

Static kinks or flexible hinges: conformational distributions of bent DNA bound to integration host factor mapped by fluorescence lifetime measurements

Gene regulation depends on proteins that bind to specific DNA sites. Such specific recognition often involves severe DNA deformations including sharp kinks. It has been unclear how rigid or flexible these protein-induced kinks are. Here, we investigated the dynamic nature of DNA in complex with integration host factor (IHF), a nucleoid-associated architectural protein known to bend one of its cognate sites (35 base pair H) into a U-turn by kinking DNA at two sites. We utilized fluorescence lifetime based FRET spectroscopy to map the distribution of bent conformations in various IHF-DNA complexes. Our results reveal a surprisingly dynamic specific complex: while 80% of the IHF-H population exhibited FRET efficiency consistent with the crystal structure, 20% exhibited FRET efficiency indicative of unbent or partially bent DNA. This conformational flexibility is modulated by sequence variations in the cognate site. In another site (H1) that lacks an A-tract of H on one side of the binding site, the population in the fully U-bent conformation decreased to 36%, as did the extent of bending. A similar decrease in the U-bent population was observed with a single base mutation in H in a consensus region on the other side. Taken together, these results provide important insights into the finely tuned interactions between IHF and its cognate sites that keep the DNA bent (or not), and yield quantitative data on the dynamic equilibrium between different DNA conformations (kinked or not kinked) that depend sensitively on DNA sequence and deformability. Notably, the difference in dynamics between IHF-H and IHF-H1 reflects the different roles of these complexes in their natural context, in the phage lambda \"intasome\" (the complex that integrates phage lambda into the E. coli chromosome).

biophysics↗