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Biology subjects

Aramaki, T.

Publications and source records attributed to Aramaki, T..

3 recordsLinked to original sources

Independent size regulation of bones and appendages in zebrafish

During development, organ size and the size of its components must be coordinated. However, the mechanisms integrating these two growth processes remain poorly understood. Here, using the zebrafish fin as a model, we investigated how bioelectric signaling regulates overall appendage size and fin-ray bone segment length. To manipulate bioelectric signaling, we expressed the hyperactive potassium channel mutant kcnk5bW169L or the dominant-negative connexin mutant Cx43T154A under a common set of cell-type-specific promoters. Cell-type-specific bioelectric manipulation in keratinocytes primarily affected fin size, whereas manipulation in osteoblasts preferentially altered fin-ray segment length. Combining these manipulations generated enlarged fins with short segments or small fins with long segments, providing direct evidence that fin size and fin-ray segment length can be regulated independently. Furthermore, optogenetic manipulation demonstrated that membrane potential itself can regulate fin size and fin-ray segment length. Together, these findings reveal that bioelectric signaling can independently regulate appendage growth and skeletal element growth through distinct cellular targets.

developmental biology↗

Piezo1 Mutant Zebrafish as a Model of Idiopathic Scoliosis

Scoliosis is a condition where the spine curves sideways, unique to humans due to their upright posture. However, the cause of this disease is not well understood because its challenging to find a model for experimentation. This study aimed to create a model for human idiopathic scoliosis by manipulating the function of mechanosensitive channels called Piezo channels in zebrafish. Zebrafish were chosen because they experience similar biomechanical forces to humans, particularly in relation to the role of mechanical force in scoliosis progression. Here we describe piezo1 and piezo2a are involved in bone formation, with a double knockout resulting in congenital systemic malformations. However, an in-frame mutation of piezo1 led to fully penetrant juvenile-onset scoliosis, bone asymmetry, reduced tissue mineral density, and abnormal intervertebral discs-resembling non-congenital scoliosis symptoms in humans. These findings suggest that functional Piezo channels responding to mechanical forces are crucial for bone formation and maintaining spine integrity, providing insights into skeletal disorders.

developmental biology↗

KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold

SummaryKofamKOALA is a web server to assign KEGG Orthologs (KOs) to protein sequences by homology search against a database of profile hidden Markov models (KOfam) with pre-computed adaptive score thresholds. KofamKOALA is faster than existing KO assignment tools with its accuracy being comparable to the best performing tools. Function annotation by KofamKOALA helps linking genes to KEGG resources such as the KEGG pathway maps and facilitates molecular network reconstruction.\n\nAvailabilityKofamKOALA, KofamScan, and KOfam are freely available from https://www.genome.jp/tools/kofamkoala/\n\nContactogata@kuicr.kyoto-u.ac.jp

bioinformatics↗