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Biology subjects

Aoyagi, T.

Publications and source records attributed to Aoyagi, T..

2 recordsLinked to original sources

Interleg coordination is not strictly controlled during walking

In human walking, the left and right legs move alternately, half a stride out of phase with each other. Although various parameters, such as stride frequency, stride length, and duty factor, vary with walking speed, the antiphase relationship of the leg motion remains unchanged. This is the case even during running. However, during walking in left-right asymmetric situations, such as walking with unilateral leg loading, walking along a curved path, and walking on a split-belt treadmill, the relative phase between left and right leg motion shifts from the antiphase condition to compensate for the asymmetry. In addition, the phase relationship fluctuates significantly during walking of elderly people and patients with neurological disabilities, such as those caused by stroke or Parkinsons disease. These observations suggest that appropriate interleg coordination is important for adaptive walking and that interleg coordination is strictly controlled during walking of healthy young people. However, the control mechanism of interleg coordination remains unclear. In the present study, we derive a quantity that models the control of interleg coordination during walking of healthy young people by taking advantage of a state-of-the-art method that combines big data science with nonlinear dynamics. This is done by modeling this control as the interaction between two coupled oscillators through the phase reduction theory and Bayesian inference method. However, the results were not what we expected. Specifically, we found that the relative phase between the motion of the legs is not actively controlled until the deviation from the antiphase condition exceeds a certain threshold. In other words, the control of interleg coordination has a dead zone like that in the case of the steering wheel of an automobile. Such forgoing of control presumably enhances energy efficiency and maneuverability during walking. Furthermore, the forgoing of control in specific situations, where we expect strict control, also appears in quiet standing. This suggests that interleg coordination in walking and quiet standing have a common characteristic strategy. Our discovery of the dead zone in the control of interleg coordination not only provides useful insight for understanding gait control in humans, but also should lead to the elucidation of the mechanisms involved in gait adaptation and disorders through further investigation of the dead zone.

bioengineering↗

Regulation of pSYSA defense plasmid copy number in Synechocystis through RNase E and a highly transcribed asRNA

Synthetic biology approaches toward the development of cyanobacterial producer strains require the availability of appropriate sets of plasmid vectors. A factor for the industrial usefulness of such strains is their robustness against pathogens, such as bacteriophages infecting cyanobacteria. Therefore, it is of great interest to understand the native plasmid replication systems and the CRISPR-Cas based defense mechanisms already present in cyanobacteria. In the model cyanobacterium Synechocystis sp. PCC 6803, four large and three smaller plasmids exist. The [~]100 kb plasmid pSYSA is specialized in defense functions by encoding all three CRISPR-Cas systems and several toxin-antitoxin systems. The expression of genes located on pSYSA depends on the plasmid copy number in the cell. The pSYSA copy number is positively correlated with the expression level of the endoribonuclease E. As molecular basis for this correlation we identified the RNase E-mediated cleavage within the pSYSA-encoded ssr7036 transcript. Together with a cis-located abundant antisense RNA (asRNA1), this mechanism resembles the control of ColE1-type plasmid replication by two overlapping RNAs, RNA I and II. In the ColE1 mechanism, two non-coding RNAs interact, supported by the small protein Rop, which is encoded separately. In contrast, in pSYSA the similar-sized protein Ssr7036 is encoded within one of the interacting RNAs and it is this mRNA that likely primes pSYSA replication. Essential for plasmid replication is furthermore the downstream encoded protein Slr7037 featuring primase and helicase domains. Deletion of slr7037 led to the integration of pSYSA into the chromosome or the other large plasmid pSYSX. Moreover, the presence of slr7037 was required for successful replication of a pSYSA-derived vector in another model cyanobacterium, Synechococcus elongatus PCC 7942. Therefore, we annotated the protein encoded by slr7037 as Cyanobacterial Rep protein A1 (CyRepA1). Our findings open new perspectives on the development of shuttle vectors for genetic engineering of cyanobacteria and of modulating the activity of the entire CRISPR-Cas apparatus in Synechocystis sp. PCC 6803.

microbiology↗