Biology subjects

Andersen, D. S.

Publications and source records attributed to Andersen, D. S..

6 recordsLinked to original sources

bioRxiv2026

Higher-Order Mechanical Neighbourhood Sensing Governs Cell Fate in Complex Tissues

Adult tissues maintain precise architectures composed of multiple interspersed cell types, yet prevailing models of cell fate patterning rely on pairwise interactions between neighbouring cells that generate binary decisions. How local interactions encode higher-order, beyond pairwise, multicellular organization remains unclear. Here, using the Drosophila midgut as a model of adult tissue self-organization, we identify a higher-order neighbourhood-sensing mechanism that couples cell identity, mechanics and stem cell (SC) fate. We show that the receptors Cirl/Latrophilin and Toll-8 are expressed in complementary cellular compartments, restricting their engagement to heterotypic interfaces between progenitors and differentiated enterocytes (ECs). These interactions generate interface-specific myosin II-dependent tension that depends on EC neighbourhood composition and mechanically gates Delta-Notch signalling. Thus, although Delta-Notch acts through pairwise interactions, these fate decisions are modulated by a higher-order mechanical state integrating information from surrounding cell contacts. A mathematical model incorporating this coupling reproduces multicellular tissue architecture from first principles and predicts that loss of higher-order coupling destabilizes progenitor organization. This prediction is consistent with the excessive fate transitions, topological disorganization and regenerative defects observed after Cirl-Toll-8 disruption. These findings establish higher-order mechanical neighbourhood sensing as a general principle by which tissues integrate local cellular identities to maintain and restore complex architectures.

cell biology↗

bioRxiv2025

Dairy manure analysis reveals significant risk of Antibiotic resistance from Extracellular DNA in Manure storage Pit

AbstractDairy manure pit storage systems are significant reservoirs for antimicrobial resistance genes (ARGs). These genes occur in both intracellular DNA (iDNA) and extracellular DNA (exDNA), but their distribution across these categories in fresh (loafing pen surface) and pit-stored dairy manure has not been previously characterized. To address this gap, we quantified the abundance of six ARGs (tetG, tetM, tetX- tetracyline, sul1-sulfonamide, and ermB-macrolide) and three mobile genetic elements (MGEs) (intI1, intI2, and intI3) in iDNA and exDNA extracted from fresh and pit-stored manure collected at a dairy farm in Iowa. While total DNA yields were lower in pit-stored relative to fresh manure samples, exDNA-to-iDNA ratios were significantly elevated across all genes (p<0.001), indicating relative enrichment of exDNA during storage. Notably, tetM exhibited a higher free (unattached) to bound (surface-attached) exDNA ratio in pit samples, which suggested an increased potential for gene transfer in the pit. Correlation network analysis revealed similar numbers of strong ARG-MGE associations in pit and fresh exDNA, but lower interconnectivity in pit exDNA. Merging fresh and pit datasets showed wider ARG-MGE associations: intI1 and intI3 strongly co-occurred with tetracyclines and macrolide resistance in iDNA, while sul1 correlated with MGEs only in the exDNA network. Microbial community profiling showed similar taxa in exDNA across manure types, while iDNA communities diverged significantly. This result could support that exDNA is relatively stable over time and in varying environments, and that iDNA is relatively more reflective of selective pressures. Overall, our results highlight exDNA as a critical but overlooked reservoir of resistance determinants, warranting further investigation and targeted management strategies in dairy systems. ImportanceTo date, extracellular DNA (exDNA) has been shown to contribute to the spread of antibiotic resistance genes (ARGs) in the environment; however, few studies have evaluated its enrichment in dairy pit-stored manure systems. This study demonstrates that dairy manure pits concentrate exDNA during dairy manure storage and serve as a reservoir for ARGs, along with mobile genetic elements that can facilitate subsequent gene transfer. The results of this study are a strong rationale for further investigation and targeted management strategies of exDNA in manure pits.

microbiology↗

bioRxiv2024

Pvf1-PvR-mediated crosstalk between the trachea and the gut guides intestinal stem cell migration to promote gut regeneration.

In adult tissues, stem cells (SCs) reside in specialized niches, where they are maintained in a quiescent state until activated by injury. Once activated, they migrate towards injured sites, where they proliferate and differentiate to replenish lost or damaged cells. Although effective tissue repair relies critically on the ability of SCs to reach and populate damaged sites, mechanisms guiding SCs towards these sites are not well understood. This is largely due to the technical challenges involved in monitoring SC dynamics in real time in vivo. Here, we devised an experimental framework that allows for real-time tracking of the spatiotemporal dynamics of intestinal SCs (ISCs) during the early phases of gut regeneration. Our data show that ISC migration is rapidly induced following injury and precedes ISC divisions and differentiation. We identify the Drosophila PDGF-VEGF-related receptor, Pvr, as a critical regulator of the migratory response to epithelial damage. ISC-specific Pvr depletion strongly suppresses ISC migration towards affected sites as well as the regenerative response. We further show that the Pvr ligand, PDGF-VEGF-related factor 1 (Pvf1), is produced by the trachea/vasculature in response to intestinal damage and acts as a guidance signal to direct ISC migration towards affected areas. Our work highlights a critical role of gut-trachea/vasculature crosstalk in guiding ISC migration during regeneration. As neovascularization of injured sites is a key feature of tissue repair in both flies and mammals, these findings could be relevant to regenerative processes in a wide range of adult tissues.

physiology↗

bioRxiv2024

Glia-mediated gut-brain cytokine signaling couples sleep to intestinal inflammation

Sickness-induced sleep is a behavior conserved across species that promotes recovery from illness, yet the underlying mechanisms are poorly understood. Here, we show that interleukin-6-like cytokine signaling from the Drosophila gut to brain glial cells regulates sleep. Under healthy conditions, this pathway promotes wakefulness. However, elevated gut cytokine signaling in response to oxidative stress - triggered by immune and inflammatory responses in the intestine - induces sleep. The cytokines Unpaired 2 and -3 are upregulated by oxidative stress in enteroendocrine cells and activate JAK-STAT signaling in glial cells, including those of the blood-brain barrier (BBB). This activity maintains elevated sleep during oxidative-stress-induced intestinal disturbances, suggesting that the JAK-STAT pathway in glia inhibits wake-promoting signaling to facilitate sleep-dependent restoration under these conditions. We find that the enteric peptide Allatostatin A (AstA) enhances wakefulness, and during intestinal oxidative stress, gut-derived Unpaired 2/3 inhibits AstA receptor expression in BBB glia, thereby sustaining an elevated sleep state during gut inflammation or illness. Taken together, our work identifies a gut-to-glial communication pathway that couples sleep with intestinal homeostasis and disease, enhancing sleep during intestinal sickness, and contributes to our understanding of how sleep disturbances arise from gastrointestinal disturbances.

animal behavior and cognition↗

bioRxiv2023

Drosophila activins adapt gut size to food intake and promote regenerative growth

Rapidly renewable tissues adapt different strategies to cope with environmental insults. While tissue repair is associated with increased ISC proliferation and accelerated tissue turnover rates, reduced calorie intake triggers a homeostasis-breaking process causing adaptive resizing of the gut. Here we show that activins are key drivers of both adaptive and regenerative growth. Activin-{beta} (Act-{beta}) is produced by progenitor cells in response to intestinal infections and stimulates ISC proliferation and turnover rates to promote tissue repair. Dawdle (Daw), a divergent Drosophila activin, signals through its receptor, BaboC, in progenitor cells to promote their maturation into enterocytes (ECs). Daw is dynamically regulated during starvation-refeeding cycles, where it couples nutrient intake with progenitor maturation and adaptive resizing of the gut. Our results highlight an activin-dependent mechanism coupling nutrient intake with progenitor-to-EC maturation to promote adaptive resizing of the gut and further establish activins as key regulators of adult tissue plasticity.

physiology↗

bioRxiv2020

Dilp8 controls a time window for tissue size adjustment in Drosophila

The control of organ size mainly relies on precise autonomous growth programs. However, organ development is subject to random variations, called developmental noise, best revealed by the fluctuating asymmetry observed between bilateral organs. The developmental mechanisms ensuring bilateral symmetry in organ size are mostly unknown. In Drosophila, null mutations for the relaxin-like hormone Dilp8 increase wing fluctuating asymmetry, suggesting that Dilp8 plays a role in buffering developmental noise. Here we show that size adjustment of the wing primordia involves a peak of Dilp8 expression that takes place sharply at the end of juvenile growth. Wing size adjustment relies on a crossorgan communication involving the epidermis as the source of Dilp8. We identify ecdysone signaling as both the trigger for epidermal dilp8 expression and its downstream target in the wing primordia, thereby establishing reciprocal feedback between the two hormones as a systemic mechanism controlling organ size precision. Our results reveal a hormone-based time window ensuring fine-tuning of organ size and bilateral symmetry.

developmental biology↗