Amer, N. R. | Search bioRxiv

bioRxiv2026

Metric-dependent genomic diversity reveals phylogenetic and ecological structure in saproxylic beetles

Abstract 1. Comparative studies can reach different conclusions when genomic-diversity metrics use different denominators. 2. We analysed standardized ddRAD-seq data from 759 individuals, 149 species-by-site population records and 26 saproxylic beetle species across eight Polish forest complexes. 3. Species identity and sampling hierarchy explained most population-level variation. Deciduous-associated species had higher variant-site expected heterozygosity than conifer-associated species. 4. All-position nucleotide diversity showed stable phylogenetic signal, whereas occurrence tier and exploratory forest-management and protection contrasts showed no consistent associations. 5. Genomic-diversity metrics are not interchangeable; comparative assessments should report their denominator and test lineage sensitivity.

evolutionary biology↗

bioRxiv2026

Beyond deadwood volume: structural heterogeneity and species-specific dispersal shape saproxylic beetle genetics

Many rare saproxylic (deadwood-dwelling) beetles are among Europes most threatened insects, yet the relative importance of local microhabitat quality versus broad-scale landscape connectivity in shaping their genetic integrity remains poorly understood. We evaluated environmental drivers for 13 saproxylic beetle species--rare old-growth specialists, common taxa, and economically significant pests--across eight major forest complexes in Poland, using double digest restriction-site associated DNA sequencing (ddRAD-seq) paired with plot-level structural inventories and estimated effective migration surfaces (EEMS) modelling. A beta generalized linear mixed model identified deadwood diversity as the only significant within-species predictor of observed heterozygosity ({beta} = 0.041, 95% CI 0.0227-0.0586, p < 10-); total deadwood volume, forest age, time since logging, stump density, and veteran tree density were not significant. Management-category contrasts in observed heterozygosity (Ho) and the inbreeding coefficient (Fis) were non-significant after Tukey adjustment. Predictor x ecological-tier interactions did not differ detectably between rare and common species for five of six structural predictors; time since last logging was the exception ({chi}{superscript 2} = 4.56, p = 0.033). EEMS patterns differed among species and fell into three broad groups: regional lineage barriers, asymmetrical corridors, and surfaces close to isolation- by-distance expectations. These results associate plot-level heterozygosity with deadwood diversity and show that regional gene-flow patterns cannot be generalised across saproxylic beetles. Conservation planning should therefore combine local deadwood restoration with species-specific assessment of landscape connectivity.

evolutionary biology↗